Variant report
| Variant | rs17866168 |
|---|---|
| Chromosome Location | chr4:118611561-118611562 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NDST3-4 | chr4:118610091-118612343 | ENSG00000236922.5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10030951 | 1.00[EUR][1000 genomes] |
| rs17864983 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865041 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865240 | 1.00[EUR][1000 genomes] |
| rs17865298 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865525 | 1.00[EUR][1000 genomes] |
| rs17865841 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865941 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865942 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17865943 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866237 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866297 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866799 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866800 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866801 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17866804 | 1.00[EUR][1000 genomes] |
| rs17867192 | 1.00[EUR][1000 genomes] |
| rs17867247 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869269 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869554 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869578 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869618 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869750 | 1.00[EUR][1000 genomes] |
| rs17869772 | 1.00[EUR][1000 genomes] |
| rs17869787 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17875021 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72903494 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879834 | chr4:118532627-118663111 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv879835 | chr4:118545387-118622573 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3399086 | chr4:118598398-118625286 | Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3336477 | chr4:118598398-118639356 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv879837 | chr4:118599194-118650042 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
