Variant report

Variant	rs17866799
Chromosome Location	chr4:118551173-118551174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118428948-118429401..4:118541860-118551269	H1-hESC	embryonic stem cell:	embryo
2	4:118301798-118302725..4:118541860-118551269	H1-hESC	embryonic stem cell:	embryo
3	4:118357351-118360885..4:118541860-118551269	H1-hESC	embryonic stem cell:	embryo

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10030951	1.00[EUR][1000 genomes]
rs17864983	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865041	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865110	1.00[EUR][1000 genomes]
rs17865154	1.00[EUR][1000 genomes]
rs17865227	1.00[EUR][1000 genomes]
rs17865240	1.00[EUR][1000 genomes]
rs17865298	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865525	1.00[EUR][1000 genomes]
rs17865841	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865941	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865942	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17865943	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866168	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866220	1.00[EUR][1000 genomes]
rs17866237	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866297	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866800	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866801	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866804	1.00[EUR][1000 genomes]
rs17867192	1.00[EUR][1000 genomes]
rs17867247	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869269	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869554	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869578	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869618	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869669	0.84[AFR][1000 genomes]
rs17869750	1.00[EUR][1000 genomes]
rs17869772	1.00[EUR][1000 genomes]
rs17869787	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17875021	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72903494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879833	chr4:118510812-118556306	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879836	chr4:118551144-118587270	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118543200-118557400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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