Variant report

Variant	rs17866220
Chromosome Location	chr4:118417603-118417604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10030951	1.00[EUR][1000 genomes]
rs17864978	1.00[AMR][1000 genomes]
rs17864983	1.00[EUR][1000 genomes]
rs17865041	1.00[EUR][1000 genomes]
rs17865051	1.00[EUR][1000 genomes]
rs17865068	1.00[EUR][1000 genomes]
rs17865110	1.00[EUR][1000 genomes]
rs17865154	1.00[EUR][1000 genomes]
rs17865223	1.00[EUR][1000 genomes]
rs17865227	1.00[EUR][1000 genomes]
rs17865240	1.00[EUR][1000 genomes]
rs17865298	1.00[EUR][1000 genomes]
rs17865418	1.00[EUR][1000 genomes]
rs17865525	1.00[EUR][1000 genomes]
rs17865841	1.00[EUR][1000 genomes]
rs17865914	1.00[EUR][1000 genomes]
rs17865941	1.00[EUR][1000 genomes]
rs17865942	1.00[EUR][1000 genomes]
rs17865943	1.00[EUR][1000 genomes]
rs17866005	1.00[EUR][1000 genomes]
rs17866237	1.00[EUR][1000 genomes]
rs17866297	1.00[EUR][1000 genomes]
rs17866396	1.00[EUR][1000 genomes]
rs17866799	1.00[EUR][1000 genomes]
rs17866800	1.00[EUR][1000 genomes]
rs17866801	1.00[EUR][1000 genomes]
rs17866804	1.00[EUR][1000 genomes]
rs17866885	1.00[EUR][1000 genomes]
rs17867192	1.00[EUR][1000 genomes]
rs17867247	1.00[EUR][1000 genomes]
rs17869264	1.00[EUR][1000 genomes]
rs17869269	1.00[EUR][1000 genomes]
rs17869554	1.00[EUR][1000 genomes]
rs17869578	1.00[EUR][1000 genomes]
rs17869618	1.00[EUR][1000 genomes]
rs17869750	1.00[EUR][1000 genomes]
rs17869772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17869787	1.00[EUR][1000 genomes]
rs17875021	1.00[EUR][1000 genomes]
rs28493300	1.00[EUR][1000 genomes]
rs7690641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879827	chr4:118406599-118496672	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879828	chr4:118408638-118491496	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv967951	chr4:118414820-118423864	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118417600-118418000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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