Variant report

Variant	rs17865068
Chromosome Location	chr4:118307717-118307718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17865051	1.00[EUR][1000 genomes]
rs17865110	1.00[EUR][1000 genomes]
rs17865154	1.00[EUR][1000 genomes]
rs17865223	1.00[EUR][1000 genomes]
rs17865227	1.00[EUR][1000 genomes]
rs17865418	1.00[EUR][1000 genomes]
rs17865914	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17866005	1.00[EUR][1000 genomes]
rs17866220	1.00[EUR][1000 genomes]
rs17866396	1.00[EUR][1000 genomes]
rs17866885	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869264	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17869772	1.00[EUR][1000 genomes]
rs28493300	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470068	chr4:118296960-118327792	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118306600-118307800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:118307200-118308000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:118307200-118309200	Weak transcription	Brain Anterior Caudate	brain
4	chr4:118307200-118321000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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