Variant report
| Variant | rs17865223 |
|---|---|
| Chromosome Location | chr4:118334132-118334133 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr4:118333842-118334173 | K562 | blood: | n/a | chr4:118334008-118334019 |
| 2 | CEBPB | chr4:118333846-118334182 | HepG2 | liver: | n/a | chr4:118334008-118334019 |
| 3 | CEBPB | chr4:118333928-118334149 | H1-hESC | embryonic stem cell: | n/a | chr4:118334008-118334019 |
| 4 | CEBPB | chr4:118333852-118334143 | A549 | lung: | n/a | chr4:118334008-118334019 |
| 5 | CEBPB | chr4:118333829-118334187 | IMR90 | lung: | n/a | chr4:118334008-118334019 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPSAP35 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs17865051 | 1.00[EUR][1000 genomes] |
| rs17865068 | 1.00[EUR][1000 genomes] |
| rs17865110 | 1.00[EUR][1000 genomes] |
| rs17865154 | 1.00[EUR][1000 genomes] |
| rs17865227 | 1.00[EUR][1000 genomes] |
| rs17865265 | 1.00[YRI][hapmap] |
| rs17865418 | 1.00[EUR][1000 genomes] |
| rs17865914 | 1.00[EUR][1000 genomes] |
| rs17866005 | 1.00[EUR][1000 genomes] |
| rs17866220 | 1.00[EUR][1000 genomes] |
| rs17866396 | 1.00[EUR][1000 genomes] |
| rs17866885 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869264 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17869772 | 1.00[EUR][1000 genomes] |
| rs28493300 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004858 | chr4:118248984-118382051 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv427692 | chr4:118262899-118437573 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879826 | chr4:118292314-118351381 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
