Variant report

Variant	rs17869669
Chromosome Location	chr4:118557310-118557311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17864983	0.84[AFR][1000 genomes]
rs17865298	0.84[AFR][1000 genomes]
rs17865841	0.84[AFR][1000 genomes]
rs17865941	0.84[AFR][1000 genomes]
rs17865942	0.84[AFR][1000 genomes]
rs17865943	0.84[AFR][1000 genomes]
rs17866237	0.84[AFR][1000 genomes]
rs17866297	0.84[AFR][1000 genomes]
rs17866799	0.84[AFR][1000 genomes]
rs17866800	0.84[AFR][1000 genomes]
rs17866801	0.84[AFR][1000 genomes]
rs17867247	0.84[AFR][1000 genomes]
rs17869269	0.84[AFR][1000 genomes]
rs17869554	0.84[AFR][1000 genomes]
rs17869578	0.84[AFR][1000 genomes]
rs17869618	0.84[AFR][1000 genomes]
rs17869787	0.84[AFR][1000 genomes]
rs17875021	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879834	chr4:118532627-118663111	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879835	chr4:118545387-118622573	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879836	chr4:118551144-118587270	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118543200-118557400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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