Variant report

Variant	rs17866755
Chromosome Location	chr4:118450767-118450768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11562932	0.90[CEU][hapmap]
rs11933680	0.84[EUR][1000 genomes]
rs11938391	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11939423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532108	0.84[EUR][1000 genomes]
rs17862010	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17862948	0.82[EUR][1000 genomes]
rs17865032	0.84[EUR][1000 genomes]
rs17867007	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17867108	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2635250	0.90[CEU][hapmap];0.80[EUR][1000 genomes]
rs61313019	0.84[EUR][1000 genomes]
rs956790	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879827	chr4:118406599-118496672	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879828	chr4:118408638-118491496	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879829	chr4:118429875-118479521	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879830	chr4:118436983-118479521	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118449800-118454200	Weak transcription	Fetal Brain Male	brain
2	chr4:118450600-118451000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:118450600-118451000	Enhancers	Liver	Liver
4	chr4:118450600-118451000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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