Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	4:118454469-118464115..4:118706981-118715929	H1-hESC	embryonic stem cell:	embryo
2	4:118319405-118319911..4:118454469-118464115	H1-hESC	embryonic stem cell:	embryo
3	4:118454469-118464115..4:118659345-118667424	H1-hESC	embryonic stem cell:	embryo

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10004338	0.93[ASN][1000 genomes]
rs10006777	0.93[ASN][1000 genomes]
rs11562862	1.00[ASN][1000 genomes]
rs11933680	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938391	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11939423	0.84[EUR][1000 genomes]
rs1532108	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862010	0.82[AMR][1000 genomes]
rs17865032	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17865194	1.00[ASN][1000 genomes]
rs17865321	1.00[ASN][1000 genomes]
rs17866006	0.80[ASN][1000 genomes]
rs17866755	0.84[EUR][1000 genomes]
rs17866796	0.80[ASN][1000 genomes]
rs17866797	0.80[ASN][1000 genomes]
rs17866927	0.90[ASN][1000 genomes]
rs17866975	1.00[ASN][1000 genomes]
rs17867007	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867108	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129729	0.80[ASN][1000 genomes]
rs4437321	0.80[ASN][1000 genomes]
rs766563	0.93[ASN][1000 genomes]
rs956790	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879827	chr4:118406599-118496672	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879828	chr4:118408638-118491496	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879829	chr4:118429875-118479521	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv879830	chr4:118436983-118479521	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118455000-118459800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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