Variant report

Variant	rs17866006
Chromosome Location	chr4:118403571-118403572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004338	0.87[ASN][1000 genomes]
rs10006777	0.87[ASN][1000 genomes]
rs11562862	0.80[ASN][1000 genomes]
rs11933680	0.80[ASN][1000 genomes]
rs1532108	0.80[ASN][1000 genomes]
rs17865032	0.80[ASN][1000 genomes]
rs17865194	0.80[ASN][1000 genomes]
rs17865321	0.80[ASN][1000 genomes]
rs17866796	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866797	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866927	0.90[ASN][1000 genomes]
rs17866975	0.80[ASN][1000 genomes]
rs17867007	0.80[ASN][1000 genomes]
rs17867108	0.80[ASN][1000 genomes]
rs4129729	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61313019	0.80[ASN][1000 genomes]
rs766563	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118402200-118403800	Enhancers	NHEK	skin
2	chr4:118402400-118403600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:118402400-118403800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:118402800-118403600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:118402800-118403800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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