Variant report

Variant	rs17866927
Chromosome Location	chr4:118417807-118417808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004338	0.97[ASN][1000 genomes]
rs10006777	0.97[ASN][1000 genomes]
rs11562862	0.90[ASN][1000 genomes]
rs11933680	0.90[ASN][1000 genomes]
rs1532108	0.90[ASN][1000 genomes]
rs17865032	0.90[ASN][1000 genomes]
rs17865194	0.90[ASN][1000 genomes]
rs17865321	0.90[ASN][1000 genomes]
rs17866006	0.90[ASN][1000 genomes]
rs17866796	0.90[ASN][1000 genomes]
rs17866797	0.90[ASN][1000 genomes]
rs17866975	0.90[ASN][1000 genomes]
rs17867007	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17867108	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4129729	0.90[ASN][1000 genomes]
rs4437321	0.90[ASN][1000 genomes]
rs61313019	0.90[ASN][1000 genomes]
rs766563	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879827	chr4:118406599-118496672	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879828	chr4:118408638-118491496	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv967951	chr4:118414820-118423864	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118417600-118418000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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