Variant report

Variant	rs17866956
Chromosome Location	chr7:126781651-126781652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17864959	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865063	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865133	1.00[YRI][hapmap]
rs17865858	0.90[YRI][hapmap]
rs17866780	1.00[YRI][hapmap]
rs17866903	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867020	0.90[YRI][hapmap]
rs17867256	1.00[YRI][hapmap]
rs17869343	1.00[AMR][1000 genomes]
rs17869416	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17875030	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56742208	1.00[AMR][1000 genomes]
rs6954791	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6959432	1.00[YRI][hapmap]
rs6964696	1.00[YRI][hapmap]
rs6976356	1.00[YRI][hapmap]
rs7786082	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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