Variant report
| Variant | rs17869343 |
|---|---|
| Chromosome Location | chr7:126587483-126587484 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126587367-126589276..7:126756671-126761022 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126587367-126589276..7:126733290-126737485 | H1-hESC | embryonic stem cell: | embryo |
| 3 | 7:126587367-126589276..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126587367-126589276..7:126880504-126885902 | H1-hESC | embryonic stem cell: | embryo |
| 5 | chr7:126586006..126588015-chr7:126594826..126596374,2 | MCF-7 | breast: | |
| 6 | 7:126085913-126088095..7:126587367-126589276 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10231192 | 0.89[YRI][hapmap] |
| rs11973055 | 1.00[YRI][hapmap] |
| rs11976917 | 0.89[YRI][hapmap] |
| rs11980252 | 0.82[YRI][hapmap] |
| rs17864959 | 1.00[AMR][1000 genomes] |
| rs17865063 | 1.00[AMR][1000 genomes] |
| rs17865083 | 0.82[YRI][hapmap] |
| rs17866899 | 0.82[YRI][hapmap] |
| rs17866903 | 1.00[AMR][1000 genomes] |
| rs17869367 | 1.00[YRI][hapmap] |
| rs17869416 | 1.00[AMR][1000 genomes] |
| rs17875030 | 1.00[AMR][1000 genomes] |
| rs55849147 | 0.82[AFR][1000 genomes] |
| rs56742208 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6948111 | 0.89[YRI][hapmap] |
| rs6954791 | 1.00[AMR][1000 genomes] |
| rs73723522 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv608378 | chr7:126570120-126597132 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
