Variant report

Variant	rs17869705
Chromosome Location	chr7:126927960-126927961
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17864966	1.00[AMR][1000 genomes]
rs17864995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865398	1.00[AMR][1000 genomes]
rs17865431	1.00[AMR][1000 genomes]
rs17865485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17867074	1.00[AMR][1000 genomes]
rs17875094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126926800-126928200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:126926800-126928200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:126927000-126928200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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