Variant report
| Variant | rs17864995 |
|---|---|
| Chromosome Location | chr7:126932021-126932022 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr7:126931939-126932021 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126931393..126934392-chr7:126943666..126946573,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236105 | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs17864966 | 1.00[AMR][1000 genomes] |
| rs17865398 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17865431 | 1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17865485 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17865902 | 1.00[MEX][hapmap] |
| rs17867074 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17869283 | 1.00[YRI][hapmap] |
| rs17869348 | 0.87[YRI][hapmap] |
| rs17869705 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17875094 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
