Variant report

Variant	rs1787034
Chromosome Location	chr11:65382564-65382565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:287)
CpG islands
(count:61)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:287 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:65382535-65383396	Hela-S3	cervix:	n/a	n/a
2	POU2F2	chr11:65382411-65383151	GM12891	blood:	n/a	n/a
3	FOSL2	chr11:65382551-65382888	A549	lung:	n/a	n/a
4	POLR2A	chr11:65382364-65383516	U87	brain:	n/a	n/a
5	STAT3	chr11:65382491-65382931	MCF10A-Er-Src	breast:	n/a	chr11:65382772-65382780
6	TCF12	chr11:65382399-65383257	ECC-1	luminal epithelium:	n/a	n/a
7	YY1	chr11:65382388-65383319	ECC-1	luminal epithelium:	n/a	n/a
8	RUNX3	chr11:65382355-65383498	GM12878	blood:	n/a	n/a
9	EP300	chr11:65382406-65383044	T-47D	breast:	n/a	chr11:65382824-65382831
10	POLR2A	chr11:65381359-65383632	Hela-S3	cervix:	n/a	n/a
11	SRF	chr11:65382351-65383544	MCF-7	breast:	n/a	n/a
12	TRIM28	chr11:65382454-65383367	K562	blood:	n/a	n/a
13	MAX	chr11:65382489-65383498	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr11:65380316-65385264	GM12892	blood:	n/a	n/a
15	NFYB	chr11:65382460-65383425	GM12878	blood:	n/a	n/a
16	MAX	chr11:65382218-65383970	K562	blood:	n/a	n/a
17	ELF1	chr11:65382489-65383437	A549	lung:	n/a	chr11:65382821-65382832 chr11:65382821-65382832 chr11:65382822-65382831
18	ATF2	chr11:65382538-65383038	GM12878	blood:	n/a	n/a
19	BRCA1	chr11:65382539-65383350	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr11:65382372-65383549	GM19193	blood:	n/a	n/a
21	POLR2A	chr11:65381032-65383701	H1-hESC	embryonic stem cell:	n/a	n/a
22	GABPA	chr11:65382551-65383065	H1-hESC	embryonic stem cell:	n/a	n/a
23	MAFF	chr11:65382560-65383009	K562	blood:	n/a	chr11:65382673-65382691
24	TBP	chr11:65382508-65383352	GM12878	blood:	n/a	n/a
25	MAX	chr11:65382465-65383501	Hela-S3	cervix:	n/a	n/a
26	BCL3	chr11:65382373-65383436	A549	lung:	n/a	chr11:65383406-65383414
27	SRF	chr11:65382528-65382907	K562	blood:	n/a	n/a
28	SP1	chr11:65382486-65383273	K562	blood:	n/a	chr11:65382882-65382893 chr11:65382882-65382894 chr11:65382960-65382969 chr11:65382961-65382970 chr11:65382884-65382893 chr11:65382882-65382894 chr11:65382883-65382892
29	MBD4	chr11:65382539-65383247	HepG2	liver:	n/a	n/a
30	CREB1	chr11:65382497-65383453	K562	blood:	n/a	n/a
31	HEY1	chr11:65382384-65382959	K562	blood:	n/a	n/a
32	MYC	chr11:65382422-65383692	K562	blood:	n/a	n/a
33	POLR2A	chr11:65381343-65383571	GM12892	blood:	n/a	n/a
34	CHD2	chr11:65382549-65383675	Hela-S3	cervix:	n/a	chr11:65382884-65382894
35	ELF1	chr11:65382548-65383961	GM12878	blood:	n/a	chr11:65383495-65383507 chr11:65382821-65382832 chr11:65382821-65382832 chr11:65383602-65383614 chr11:65382822-65382831 chr11:65383769-65383781
36	NFIC	chr11:65382509-65383019	HepG2	liver:	n/a	n/a
37	CEBPB	chr11:65382543-65383188	IMR90	lung:	n/a	chr11:65382557-65382574
38	SIX5	chr11:65381247-65383526	A549	lung:	n/a	n/a
39	MAX	chr11:65382379-65383449	NB4	blood:	n/a	n/a
40	TFAP2C	chr11:65382425-65383337	Hela-S3	cervix:	n/a	n/a
41	CHD1	chr11:65382550-65382847	GM12878	blood:	n/a	n/a
42	USF1	chr11:65382522-65383039	A549	lung:	n/a	n/a
43	POLR2A	chr11:65382427-65383636	MCF-7	breast:	n/a	n/a
44	GABPA	chr11:65382429-65383390	Hela-S3	cervix:	n/a	chr11:65383244-65383253 chr11:65383132-65383146 chr11:65383185-65383196 chr11:65383083-65383094 chr11:65383187-65383196 chr11:65383244-65383255 chr11:65383246-65383255 chr11:65383085-65383094 chr11:65383182-65383196 chr11:65383185-65383199 chr11:65383241-65383255 chr11:65383080-65383094
45	YY1	chr11:65382540-65383053	GM12892	blood:	n/a	n/a
46	ELK4	chr11:65382550-65383258	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr11:65382409-65383512	HepG2	liver:	n/a	n/a
48	HCFC1	chr11:65381129-65384122	Hela-S3	cervix:	n/a	n/a
49	IRF1	chr11:65382556-65383523	K562	blood:	n/a	chr11:65382882-65382896
50	IRF1	chr11:65382561-65383390	K562	blood:	n/a	chr11:65382882-65382896

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65382529-65382579	HCPEpiC	choroid plexus:	n/a
2	chr11:65382529-65382579	ovcar-3	ovarian:	n/a
3	chr11:65382529-65382579	HCF	heart:	n/a
4	chr11:65382529-65382579	PrEC	prostate:	n/a
5	chr11:65382529-65382579	GM12891	blood:	n/a
6	chr11:65382529-65382579	AG10803	skin:	n/a
7	chr11:65382529-65382579	GM12878	blood:	n/a
8	chr11:65382529-65382579	AG09319	gingival:	n/a
9	chr11:65382529-65382579	SK-N-SH	brain:	n/a
10	chr11:65382529-65382579	CMK	blood:	n/a
11	chr11:65382529-65382579	ECC-1	luminal epithelium:	n/a
12	chr11:65382529-65382579	LNCaP	prostate:	n/a
13	chr11:65382529-65382579	Hepatocyte	liver:	n/a
14	chr11:65382529-65382579	NB4	blood:	n/a
15	chr11:65382529-65382579	HEK293	kidney:	embryo
16	chr11:65382529-65382579	U87	brain:	n/a
17	chr11:65382529-65382579	SK-N-SH_RA	brain:	n/a
18	chr11:65382529-65382579	PANC-1	pancreas:	n/a
19	chr11:65382529-65382579	HIPEpiC	eye:	n/a
20	chr11:65382529-65382579	T-47D	breast:	n/a
21	chr11:65382529-65382579	GM12892	blood:	n/a
22	chr11:65382529-65382579	MCF10A-Er-Src	breast:	n/a
23	chr11:65382529-65382579	HUVEC	blood vessel:	n/a
24	chr11:65382529-65382579	NH-A	brain:	n/a
25	chr11:65382529-65382579	SKMC	muscle:	n/a
26	chr11:65382529-65382579	HNPCEpiC	eye:	n/a
27	chr11:65382529-65382579	Jurkat	blood:	n/a
28	chr11:65382529-65382579	AG09309	skin:	n/a
29	chr11:65382529-65382579	Hela-S3	cervix:	n/a
30	chr11:65382529-65382579	AG04449	skin:	fetal
31	chr11:65382529-65382579	GM06990	blood:	n/a
32	chr11:65382529-65382579	SK-N-MC	brain:	n/a
33	chr11:65382529-65382579	HPAEpiC	pulmonary alveolar:	n/a
34	chr11:65382529-65382579	Caco-2	colon:	n/a
35	chr11:65382529-65382579	HCT-116	colon:	n/a
36	chr11:65382529-65382579	BJ	skin:	n/a
37	chr11:65382529-65382579	HMEC	breast:	n/a
38	chr11:65382529-65382579	HEEpiC	esophagus:	n/a
39	chr11:65382529-65382579	AoSMC	blood vessel:	n/a
40	chr11:65382529-65382579	HAEpiC	amniotic membrane:	n/a
41	chr11:65382529-65382579	MCF-7	breast:	n/a
42	chr11:65382529-65382579	HRCEpiC	kidney:	n/a
43	chr11:65382529-65382579	HRPEpiC	eye:	n/a
44	chr11:65382529-65382579	NHDF-neo	bronchial:	n/a
45	chr11:65382529-65382579	HCM	heart:	n/a
46	chr11:65382529-65382579	NHBE	bronchial:	n/a
47	chr11:65382529-65382579	H1-hESC	embryonic stem cell:	embryo
48	chr11:65382529-65382579	IMR90	lung:	fetal
49	chr11:65382529-65382579	HepG2	liver:	n/a
50	chr11:65382529-65382579	ProgFib	skin:	n/a

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65263855..65269766-chr11:65381384..65386650,8	MCF-7	breast:
2	chr11:65306570..65308318-chr11:65381821..65384190,3	K562	blood:
3	chr11:65360399..65364379-chr11:65381821..65384245,5	MCF-7	breast:
4	chr11:65380932..65386957-chr11:65428679..65431812,7	MCF-7	breast:
5	chr11:65306623..65309907-chr11:65380382..65384254,6	MCF-7	breast:
6	chr11:65380696..65385200-chr11:65403578..65408941,10	MCF-7	breast:
7	chr11:65381837..65384874-chr11:65408944..65413829,9	MCF-7	breast:
8	chr11:65336061..65346997-chr11:65371025..65390625,42	MCF-7	breast:
9	chr11:65187686..65190825-chr11:65382299..65384886,3	K562	blood:
10	chr11:65292702..65295176-chr11:65381785..65383528,2	MCF-7	breast:
11	chr11:65381645..65384488-chr11:65623214..65626222,3	K562	blood:
12	chr11:65335401..65344755-chr11:65379602..65385163,20	K562	blood:
13	chr11:65381281..65383865-chr11:65653428..65656647,3	MCF-7	breast:
14	chr11:65381958..65383538-chr11:65656328..65658053,2	MCF-7	breast:
15	chr11:65381788..65384683-chr11:65666301..65668827,4	K562	blood:
16	chr11:65381971..65384321-chr11:65627424..65629349,2	K562	blood:
17	chr11:65377447..65384699-chr11:65622853..65629192,15	MCF-7	breast:
18	chr11:65264619..65266126-chr11:65381205..65383420,2	MCF-7	breast:
19	chr11:65381571..65386287-chr11:65427993..65433260,8	MCF-7	breast:
20	chr11:65380332..65382692-chr11:65425044..65427777,2	MCF-7	breast:
21	chr11:65382313..65382965-chr5:33440788..33441578,2	Hela-S3	cervix:
22	chr11:65380602..65383246-chr11:65768678..65771455,2	K562	blood:
23	chr11:65100087..65102594-chr11:65381500..65383141,2	MCF-7	breast:
24	chr11:65313091..65315677-chr11:65380016..65384543,4	K562	blood:
25	chr11:65379754..65386537-chr11:65415130..65425067,26	MCF-7	breast:
26	chr11:65381719..65383349-chr11:65554196..65557028,2	MCF-7	breast:
27	chr11:65380590..65383285-chr11:118661411..118663199,3	MCF-7	breast:
28	chr11:65382317..65383070-chr6:13615130..13615823,2	Hela-S3	cervix:
29	chr11:65381104..65384699-chr11:65624758..65628552,6	MCF-7	breast:
30	chr11:65381231..65384129-chr11:65666512..65668944,3	K562	blood:
31	chr11:65264270..65268654-chr11:65380562..65385771,6	K562	blood:
32	chr11:65189868..65193892-chr11:65380372..65385774,5	MCF-7	breast:
33	chr11:65186294..65191468-chr11:65379126..65384544,8	MCF-7	breast:

No data

Variant related genes	Relation type
PCNXL3	TF binding region
MAP3K11	TF binding region
PCNXL3	CpG island
MAP3K11	CpG island
ENSG00000172757	Chromatin interaction
ENSG00000173338	Chromatin interaction
ENSG00000142186	Chromatin interaction
ENSG00000173442	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000110367	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000266041	Chromatin interaction
ENSG00000133884	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000265874	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000113407	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000175592	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000213445	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000172818	Chromatin interaction
ENSG00000176973	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10896027	0.80[EUR][1000 genomes]
rs10896043	0.85[CHB][hapmap];0.94[CHD][hapmap]
rs11227249	0.82[EUR][1000 genomes]
rs11227250	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11227261	0.85[CHB][hapmap];0.94[CHD][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11227302	0.85[CHB][hapmap];0.94[CHD][hapmap]
rs1151488	1.00[CHB][hapmap]
rs1193851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1205259	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281400	0.86[ASN][1000 genomes]
rs1784223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298615	0.85[CHB][hapmap]
rs2448490	0.90[MEX][hapmap]
rs2509948	0.91[GIH][hapmap];0.90[MEX][hapmap]
rs3372	0.85[CHB][hapmap];0.94[CHD][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap]
rs34007146	0.86[ASN][1000 genomes]
rs34462081	0.81[EUR][1000 genomes]
rs4930156	0.91[GIH][hapmap];0.90[MEX][hapmap]
rs4930304	0.94[CHD][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494003	0.85[CHB][hapmap];0.94[CHD][hapmap]
rs58950470	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122657	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7944860	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
4	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
5	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
6	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
7	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
8	nsv897721	chr11:65278461-65422853	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv897722	chr11:65278461-65436888	Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
10	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
11	nsv468599	chr11:65335705-65427346	ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
12	nsv555213	chr11:65335705-65427346	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
13	nsv897732	chr11:65335705-65427346	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
14	nsv468600	chr11:65335705-65431360	Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
15	nsv555214	chr11:65335705-65431360	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
16	nsv897733	chr11:65335705-65431360	Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
17	nsv897734	chr11:65335705-65436888	Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
18	nsv897735	chr11:65335705-65481166	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
19	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
20	nsv897739	chr11:65337714-65388300	Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
21	nsv897743	chr11:65338589-65382564	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv2761680	chr11:65344328-65391317	Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	46 gene(s)	inside rSNPs	diseases
23	nsv897746	chr11:65349756-65427346	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
24	nsv897747	chr11:65353906-65481166	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1787034	SLC22A9	cis	parietal	SCAN
rs1787034	ZBTB3	cis	parietal	SCAN
rs1787034	SLC22A10	cis	parietal	SCAN
rs1787034	RNASEH2C	cis	parietal	SCAN
rs1787034	SIPA1	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65378200-65382800	Active TSS	Right Atrium	heart
2	chr11:65378400-65384200	Active TSS	Psoas Muscle	Psoas
3	chr11:65378800-65384000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr11:65379000-65384400	Active TSS	Fetal Kidney	kidney
5	chr11:65379800-65384000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr11:65380200-65384600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:65380400-65384200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:65380400-65384200	Active TSS	Small Intestine	intestine
9	chr11:65380400-65384600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr11:65380400-65384600	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr11:65380600-65382600	Flanking Active TSS	Fetal Muscle Trunk	muscle
12	chr11:65380600-65382800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:65380600-65384000	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:65380600-65384000	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:65380800-65382800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:65380800-65384000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:65380800-65384000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:65380800-65384200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:65380800-65384200	Active TSS	Ovary	ovary
20	chr11:65380800-65384200	Active TSS	NHDF-Ad	bronchial
21	chr11:65381000-65383600	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr11:65381000-65383800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:65381000-65383800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:65381000-65383800	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr11:65381000-65383800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:65381000-65383800	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr11:65381000-65383800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:65381000-65383800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:65381000-65383800	Active TSS	Brain Angular Gyrus	brain
30	chr11:65381000-65383800	Active TSS	Brain Cingulate Gyrus	brain
31	chr11:65381000-65383800	Active TSS	Brain Hippocampus Middle	brain
32	chr11:65381000-65383800	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr11:65381000-65383800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:65381000-65383800	Active TSS	Brain Substantia Nigra	brain
35	chr11:65381000-65383800	Active TSS	Fetal Stomach	stomach
36	chr11:65381000-65383800	Active TSS	Gastric	stomach
37	chr11:65381000-65383800	Active TSS	Lung	lung
38	chr11:65381000-65383800	Active TSS	Pancreas	Pancrea
39	chr11:65381000-65383800	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr11:65381000-65383800	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr11:65381000-65383800	Active TSS	Rectal Smooth Muscle	rectum
42	chr11:65381000-65383800	Active TSS	Spleen	Spleen
43	chr11:65381000-65383800	Active TSS	Hela-S3	cervix
44	chr11:65381000-65384000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:65381000-65384000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:65381000-65384000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:65381000-65384000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:65381000-65384000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:65381000-65384000	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr11:65381000-65384000	Active TSS	Primary T killer naive cells fromperipheralblood	blood

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