Variant report

Variant	rs17879556
Chromosome Location	chr5:79358627-79358628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17879633	0.83[AFR][1000 genomes]
rs17882422	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79338200-79363600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:79338200-79367600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr5:79340000-79363400	Weak transcription	Left Ventricle	heart
4	chr5:79345200-79364200	Weak transcription	Right Ventricle	heart
5	chr5:79348200-79366400	Weak transcription	Brain Substantia Nigra	brain
6	chr5:79350600-79363200	Weak transcription	Psoas Muscle	Psoas
7	chr5:79351600-79379200	Weak transcription	Pancreas	Pancrea
8	chr5:79351800-79361800	Weak transcription	Primary T cells from cord blood	blood
9	chr5:79352000-79361200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:79352000-79365200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:79352000-79365600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:79352000-79365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:79352200-79359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:79352400-79378200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:79352800-79363400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:79353200-79365600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:79353600-79363400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:79353600-79365600	Weak transcription	Fetal Intestine Small	intestine
19	chr5:79354200-79359800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:79354600-79378400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:79355800-79360600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:79356000-79361800	Weak transcription	Brain Anterior Caudate	brain
23	chr5:79356400-79366800	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:79356600-79373800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:79356800-79365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:79357000-79373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:79357200-79359400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:79357200-79359600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:79357200-79359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:79357200-79359800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:79357200-79363800	Weak transcription	Fetal Muscle Leg	muscle
32	chr5:79357200-79372800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr5:79357600-79359400	Weak transcription	NHDF-Ad	bronchial
34	chr5:79357800-79367800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:79358400-79363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:79358400-79373600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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