Variant report

Variant	rs17879633
Chromosome Location	chr5:79338133-79338134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17879556	0.83[AFR][1000 genomes]
rs17882422	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv882219	chr5:79320677-79354147	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882221	chr5:79321439-79350726	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882222	chr5:79321439-79354147	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882223	chr5:79330559-79357117	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv882224	chr5:79335975-79351735	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79332800-79339200	Weak transcription	Left Ventricle	heart
2	chr5:79332800-79350200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:79335600-79338200	Enhancers	Brain Substantia Nigra	brain
4	chr5:79335800-79338200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:79336800-79338200	Enhancers	Brain Angular Gyrus	brain
6	chr5:79336800-79339200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:79337200-79338400	Enhancers	Brain Hippocampus Middle	brain
8	chr5:79337200-79338400	Enhancers	Fetal Muscle Leg	muscle
9	chr5:79337200-79339000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:79337600-79338600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:79337800-79338200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:79337800-79338200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:79337800-79338200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr5:79337800-79338400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:79338000-79338200	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr5:79338000-79338400	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr5:79338000-79338600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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