Variant report

Variant	rs17882065
Chromosome Location	chr16:70487323-70487324
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr16:70487306-70488395	HepG2	liver:	n/a	n/a
2	MXI1	chr16:70487217-70489403	SK-N-SH	brain:	n/a	n/a
3	HCFC1	chr16:70487282-70489721	Hela-S3	cervix:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70486960..70490351-chr16:70556167..70558867,5	MCF-7	breast:
2	chr16:70485245..70488072-chr16:70494392..70496535,2	K562	blood:
3	chr16:70469678..70473680-chr16:70486697..70489592,5	K562	blood:
4	chr16:70486978..70488689-chr16:70557336..70559027,2	MCF-7	breast:
5	chr16:70470174..70475385-chr16:70486021..70489021,8	K562	blood:
6	chr16:70472361..70474333-chr16:70486789..70489619,2	MCF-7	breast:
7	chr16:70412581..70417154-chr16:70486443..70491865,11	MCF-7	breast:
8	chr16:70413028..70417887-chr16:70485225..70490092,12	MCF-7	breast:
9	chr16:70444656..70446318-chr16:70486417..70488147,2	MCF-7	breast:
10	chr16:70472717..70474630-chr16:70487093..70489671,2	MCF-7	breast:
11	chr16:70486101..70489000-chr16:70557661..70559379,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUK-2	chr16:70486908-70487354	NONHSAT143432

No data

Variant related genes	Relation type
FUK	TF binding region
ENSG00000103051	Chromatin interaction
ENSG00000260111	Chromatin interaction
ENSG00000157350	Chromatin interaction
ENSG00000189091	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28523566	1.00[AMR][1000 genomes]
rs7187629	1.00[AMR][1000 genomes]
rs7192564	1.00[AMR][1000 genomes]
rs7196338	1.00[AMR][1000 genomes]
rs7202183	1.00[AMR][1000 genomes]
rs7205416	1.00[AMR][1000 genomes]
rs8043683	1.00[AMR][1000 genomes]
rs8046296	1.00[AMR][1000 genomes]
rs8048007	1.00[AMR][1000 genomes]
rs8058557	1.00[AMR][1000 genomes]
rs8059844	1.00[AMR][1000 genomes]
rs8060051	1.00[AMR][1000 genomes]
rs9936419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	esv1815154	chr16:70467819-70515355	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70478400-70487400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr16:70478800-70487400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr16:70479400-70487400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr16:70481200-70487400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr16:70481200-70487400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr16:70481200-70487400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:70481400-70487400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr16:70481400-70487400	Weak transcription	Primary B cells from cord blood	blood
9	chr16:70482000-70487400	Weak transcription	GM12878-XiMat	blood
10	chr16:70484200-70487400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr16:70485000-70487400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr16:70485000-70487800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:70485200-70487400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr16:70485200-70487400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:70485200-70487400	Weak transcription	Fetal Intestine Small	intestine
16	chr16:70485200-70487400	Weak transcription	HMEC	breast
17	chr16:70485200-70487600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:70485200-70487600	Weak transcription	Osteobl	bone
19	chr16:70485200-70487800	Weak transcription	Esophagus	oesophagus
20	chr16:70485200-70487800	Weak transcription	Right Atrium	heart
21	chr16:70485400-70487400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:70485400-70487400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:70485400-70487400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr16:70485400-70487400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr16:70485400-70487400	Weak transcription	Fetal Intestine Large	intestine
26	chr16:70485400-70487600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr16:70485400-70487600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr16:70485400-70487600	Weak transcription	Adipose Nuclei	Adipose
29	chr16:70485400-70487600	Weak transcription	Right Ventricle	heart
30	chr16:70485400-70487600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:70485400-70487600	Weak transcription	HUVEC	blood vessel
32	chr16:70485400-70487800	Weak transcription	Ovary	ovary
33	chr16:70485600-70487400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:70486800-70487400	Enhancers	HepG2	liver
35	chr16:70487200-70487400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:70487200-70487400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr16:70487200-70487400	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr16:70487200-70487400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr16:70487200-70487400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:70487200-70487400	Enhancers	Liver	Liver
41	chr16:70487200-70487400	Enhancers	Brain Anterior Caudate	brain
42	chr16:70487200-70487400	Enhancers	Brain Hippocampus Middle	brain
43	chr16:70487200-70487400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr16:70487200-70487400	Enhancers	Spleen	Spleen
45	chr16:70487200-70487400	Enhancers	Hela-S3	cervix
46	chr16:70487200-70487400	Enhancers	K562	blood
47	chr16:70487200-70487600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr16:70487200-70487600	Enhancers	Fetal Muscle Trunk	muscle
49	chr16:70487200-70487800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr16:70487200-70488000	Flanking Active TSS	Dnd41	blood

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