Variant report

Variant	rs7192564
Chromosome Location	chr16:70353960-70353961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17882065	1.00[AMR][1000 genomes]
rs28420658	1.00[AMR][1000 genomes]
rs28523566	1.00[AMR][1000 genomes]
rs7184733	0.82[AFR][1000 genomes]
rs7187629	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7190859	0.85[AFR][1000 genomes]
rs7195180	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7196338	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7202183	1.00[AMR][1000 genomes]
rs7203007	0.85[AFR][1000 genomes]
rs7205416	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043683	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8046296	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8051076	0.83[AFR][1000 genomes]
rs8058557	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059844	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8060051	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934907	1.00[AMR][1000 genomes]
rs9936419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906872	chr16:70303418-70356746	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70333800-70367800	Weak transcription	Small Intestine	intestine
2	chr16:70334000-70368400	Weak transcription	Fetal Heart	heart
3	chr16:70334200-70379800	Weak transcription	Stomach Mucosa	stomach
4	chr16:70335800-70366400	Weak transcription	Psoas Muscle	Psoas
5	chr16:70335800-70374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:70339000-70366400	Weak transcription	K562	blood
7	chr16:70339200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:70339400-70359000	Weak transcription	HUVEC	blood vessel
9	chr16:70339400-70365000	Weak transcription	A549	lung
10	chr16:70339400-70367400	Weak transcription	HMEC	breast
11	chr16:70339600-70356800	Weak transcription	GM12878-XiMat	blood
12	chr16:70342200-70357600	Weak transcription	NHLF	lung
13	chr16:70345600-70366600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr16:70346200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:70346200-70376000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:70346400-70369600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr16:70346600-70360400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr16:70347400-70371000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr16:70348200-70367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:70348200-70371000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr16:70348400-70371000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr16:70348600-70355800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr16:70348800-70354200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr16:70348800-70354600	Strong transcription	Placenta	Placenta
25	chr16:70348800-70355600	Strong transcription	Brain Hippocampus Middle	brain
26	chr16:70348800-70359600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr16:70348800-70360400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:70348800-70360400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr16:70348800-70361200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr16:70348800-70361800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr16:70348800-70365200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr16:70348800-70370600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr16:70348800-70371000	Strong transcription	Liver	Liver
34	chr16:70349000-70356200	Weak transcription	Brain Substantia Nigra	brain
35	chr16:70349000-70358600	Strong transcription	Fetal Intestine Small	intestine
36	chr16:70349200-70361200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:70349200-70362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr16:70349400-70354200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr16:70349400-70354200	Strong transcription	HSMMtube	muscle
40	chr16:70349400-70354400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr16:70349400-70357800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:70349400-70360000	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr16:70349400-70360600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr16:70349400-70362200	Strong transcription	Adipose Nuclei	Adipose
45	chr16:70349400-70362400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr16:70349400-70369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr16:70349400-70370600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr16:70349400-70371200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr16:70349400-70372000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr16:70349600-70357600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links