Variant report

Variant	rs17883086
Chromosome Location	chr11:102203990-102203991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:102203908-102204443	GM12892	blood:	n/a	n/a
2	POLR2A	chr11:102203968-102204360	GM12891	blood:	n/a	n/a
3	POLR2A	chr11:102200645-102207856	GM12891	blood:	n/a	n/a
4	POLR2A	chr11:102203955-102204350	GM12891	blood:	n/a	n/a
5	POLR2A	chr11:102203964-102204389	GM12892	blood:	n/a	n/a
6	POLR2A	chr11:102203955-102204811	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:102203896-102204782	GM12892	blood:	n/a	n/a
8	POLR2A	chr11:102202681-102205534	GM12878	blood:	n/a	n/a
9	POLR2A	chr11:102203828-102204349	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr11:102200640-102207352	GM12878	blood:	n/a	n/a
11	POLR2A	chr11:102203935-102204364	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
BIRC3	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11225210	1.00[AMR][1000 genomes]
rs11225213	1.00[AMR][1000 genomes]
rs12285135	1.00[AMR][1000 genomes]
rs12294646	1.00[AMR][1000 genomes]
rs13377354	1.00[AMR][1000 genomes]
rs17097648	1.00[AMR][1000 genomes]
rs17885041	1.00[AMR][1000 genomes]
rs7930386	1.00[AMR][1000 genomes]
rs7937825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv3384244	chr11:102195350-102220898	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102188800-102216600	Weak transcription	HSMMtube	muscle
2	chr11:102189400-102205800	Weak transcription	Psoas Muscle	Psoas
3	chr11:102189400-102216600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:102189400-102216800	Weak transcription	Right Ventricle	heart
5	chr11:102191200-102216800	Weak transcription	Aorta	Aorta
6	chr11:102191200-102217400	Weak transcription	Esophagus	oesophagus
7	chr11:102191600-102216600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:102191800-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:102194000-102204600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:102194600-102212600	Weak transcription	Dnd41	blood
11	chr11:102194800-102209800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:102195000-102210400	Weak transcription	HMEC	breast
13	chr11:102195600-102204200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:102196000-102212200	Weak transcription	Hela-S3	cervix
15	chr11:102196200-102209200	Strong transcription	Liver	Liver
16	chr11:102196600-102209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:102196800-102204000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:102196800-102204200	Strong transcription	Fetal Thymus	thymus
19	chr11:102196800-102204800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:102197000-102204000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr11:102197000-102204800	Strong transcription	Primary T cells from cord blood	blood
22	chr11:102197000-102209800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:102197600-102204200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:102197600-102204200	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:102197800-102204200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:102197800-102209400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:102198000-102204200	Strong transcription	Primary B cells from cord blood	blood
28	chr11:102198400-102209800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:102198400-102210600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr11:102198400-102217400	Weak transcription	Gastric	stomach
31	chr11:102199400-102204400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:102200000-102210400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:102200000-102216600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:102200200-102207400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:102201400-102209600	Strong transcription	GM12878-XiMat	blood
36	chr11:102201600-102207400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:102201600-102216600	Weak transcription	Colonic Mucosa	Colon
38	chr11:102202000-102212400	Weak transcription	HSMM	muscle
39	chr11:102202200-102204400	Strong transcription	Small Intestine	intestine
40	chr11:102202200-102204800	Strong transcription	Thymus	Thymus
41	chr11:102202400-102207600	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:102203000-102204000	Enhancers	Fetal Intestine Small	intestine
43	chr11:102203200-102212200	Weak transcription	Stomach Mucosa	stomach
44	chr11:102203200-102216000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:102203400-102207400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr11:102203600-102204000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:102203600-102205000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:102203600-102206000	Weak transcription	Left Ventricle	heart
49	chr11:102203600-102206000	Weak transcription	Ovary	ovary
50	chr11:102203600-102206400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links