Variant report

Variant	rs12285135
Chromosome Location	chr11:102196550-102196551
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102188098..102191031-chr11:102194628..102197426,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023445	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10082693	1.00[ASW][hapmap]
rs11225210	0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11225213	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11225214	1.00[YRI][hapmap]
rs11225216	0.85[YRI][hapmap]
rs11225228	1.00[ASW][hapmap]
rs12275676	1.00[YRI][hapmap]
rs12284238	0.85[YRI][hapmap]
rs12288849	1.00[ASW][hapmap]
rs12290870	1.00[ASW][hapmap]
rs12291210	1.00[ASW][hapmap]
rs12291456	1.00[ASW][hapmap]
rs12294646	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377312	1.00[ASW][hapmap]
rs13377354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097648	1.00[AMR][1000 genomes]
rs17883086	1.00[AMR][1000 genomes]
rs17885041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930386	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937825	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971393	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv556142	chr11:102192574-102202015	Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3384244	chr11:102195350-102220898	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102188800-102216600	Weak transcription	HSMMtube	muscle
2	chr11:102189200-102197600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:102189400-102197400	Weak transcription	Adipose Nuclei	Adipose
4	chr11:102189400-102205800	Weak transcription	Psoas Muscle	Psoas
5	chr11:102189400-102216600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:102189400-102216800	Weak transcription	Right Ventricle	heart
7	chr11:102189600-102200600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:102189600-102200800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:102189600-102200800	Weak transcription	Left Ventricle	heart
10	chr11:102190600-102197000	Weak transcription	Colonic Mucosa	Colon
11	chr11:102190600-102202800	Weak transcription	Pancreas	Pancrea
12	chr11:102191200-102197000	Weak transcription	Gastric	stomach
13	chr11:102191200-102216800	Weak transcription	Aorta	Aorta
14	chr11:102191200-102217400	Weak transcription	Esophagus	oesophagus
15	chr11:102191400-102197000	Weak transcription	Lung	lung
16	chr11:102191600-102197000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:102191600-102197000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr11:102191600-102202600	Weak transcription	Stomach Mucosa	stomach
19	chr11:102191600-102216600	Weak transcription	Brain Anterior Caudate	brain
20	chr11:102191800-102197000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:102191800-102197000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:102191800-102200800	Weak transcription	Spleen	Spleen
23	chr11:102191800-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:102192800-102198200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr11:102192800-102198400	Genic enhancers	Primary B cells from peripheral blood	blood
26	chr11:102193200-102197200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:102193200-102203200	Weak transcription	Ovary	ovary
28	chr11:102193600-102197200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr11:102193800-102196800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:102193800-102197800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:102194000-102197000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:102194000-102204600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:102194200-102197200	Weak transcription	Thymus	Thymus
34	chr11:102194200-102197600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:102194200-102200800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:102194600-102197000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:102194600-102212600	Weak transcription	Dnd41	blood
38	chr11:102194800-102197400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:102194800-102199600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:102194800-102209800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:102195000-102199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:102195000-102202800	Weak transcription	NH-A	brain
43	chr11:102195000-102210400	Weak transcription	HMEC	breast
44	chr11:102195200-102199400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:102195400-102197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:102195400-102200800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:102195400-102200800	Weak transcription	Osteobl	bone
48	chr11:102195600-102200600	Weak transcription	NHDF-Ad	bronchial
49	chr11:102195600-102200800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr11:102195600-102204200	Strong transcription	Rectal Mucosa Donor 29	rectum

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