Variant report

Variant	rs10082693
Chromosome Location	chr11:102268367-102268368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102266647..102268890-chr11:102271268..102274135,2	MCF-7	breast:
2	chr11:102267303..102269917-chr11:102272056..102274983,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10466639	1.00[AMR][1000 genomes]
rs11225219	1.00[AMR][1000 genomes]
rs11225223	1.00[AMR][1000 genomes]
rs11225228	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11225245	1.00[AMR][1000 genomes]
rs11225246	1.00[AMR][1000 genomes]
rs11547915	1.00[JPT][hapmap]
rs11604189	1.00[YRI][hapmap]
rs12270723	1.00[AMR][1000 genomes]
rs12270893	1.00[AMR][1000 genomes]
rs12271569	1.00[AMR][1000 genomes]
rs12273819	1.00[AMR][1000 genomes]
rs12275349	1.00[YRI][hapmap]
rs12278619	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279712	1.00[AMR][1000 genomes]
rs12279854	1.00[AMR][1000 genomes]
rs12281328	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282509	1.00[YRI][hapmap]
rs12283520	1.00[AMR][1000 genomes]
rs12283923	1.00[AMR][1000 genomes]
rs12285135	1.00[ASW][hapmap]
rs12288849	1.00[ASW][hapmap]
rs12288938	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12290870	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12291114	1.00[YRI][hapmap]
rs12291210	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs12291456	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12293263	1.00[AMR][1000 genomes]
rs12294170	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12295864	1.00[AMR][1000 genomes]
rs12296030	1.00[AMR][1000 genomes]
rs12792649	1.00[YRI][hapmap]
rs13377309	1.00[AMR][1000 genomes]
rs13377312	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17885474	1.00[JPT][hapmap]
rs36039928	1.00[AMR][1000 genomes]
rs3758842	1.00[YRI][hapmap]
rs7930386	1.00[ASW][hapmap]
rs9971393	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs9971623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
11	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
12	chr11:102251000-102268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:102251400-102271200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:102255600-102274800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:102257800-102277800	Strong transcription	Fetal Thymus	thymus
16	chr11:102260400-102268800	Weak transcription	HMEC	breast
17	chr11:102261200-102275000	Strong transcription	Fetal Intestine Large	intestine
18	chr11:102261200-102275400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:102261400-102274600	Strong transcription	Dnd41	blood
20	chr11:102261400-102275400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:102261600-102274800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:102261800-102269200	Strong transcription	Placenta	Placenta
23	chr11:102261800-102272800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:102261800-102272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:102261800-102273400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:102261800-102281000	Weak transcription	K562	blood
27	chr11:102262000-102273000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr11:102262000-102274800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:102262000-102277400	Strong transcription	Adipose Nuclei	Adipose
30	chr11:102262200-102272800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:102262400-102273000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:102262600-102271000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:102262600-102274600	Strong transcription	Liver	Liver
34	chr11:102262800-102269200	Weak transcription	Fetal Kidney	kidney
35	chr11:102263800-102268600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr11:102263800-102273000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:102263800-102273800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:102264000-102272800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:102264000-102277000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:102264400-102269200	Weak transcription	NHLF	lung
41	chr11:102264400-102269800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:102264400-102276800	Weak transcription	Aorta	Aorta
43	chr11:102264400-102279000	Weak transcription	Fetal Brain Male	brain
44	chr11:102264600-102270800	Weak transcription	Colonic Mucosa	Colon
45	chr11:102264600-102271200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:102264600-102272800	Weak transcription	Esophagus	oesophagus
47	chr11:102264600-102273800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:102264600-102276800	Weak transcription	Gastric	stomach
49	chr11:102264600-102279200	Weak transcription	Ovary	ovary
50	chr11:102264600-102281400	Weak transcription	Right Ventricle	heart

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