Variant report

Variant	rs10466639
Chromosome Location	chr11:102212559-102212560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102211420..102213123-chr11:102213221..102214860,2	K562	blood:
2	chr11:102158729..102159664-chr11:102212445..102213120,3	MCF-7	breast:
3	chr11:102212239..102213140-chr11:102365720..102366791,5	K562	blood:
4	chr11:102212411..102214465-chr11:102322872..102324756,2	K562	blood:

Variant related genes	Relation type
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082693	1.00[AMR][1000 genomes]
rs11225210	0.81[AFR][1000 genomes]
rs11225213	0.84[AFR][1000 genomes]
rs11225219	1.00[AMR][1000 genomes]
rs11225223	1.00[AMR][1000 genomes]
rs11225228	1.00[AMR][1000 genomes]
rs11225245	1.00[AMR][1000 genomes]
rs11225246	1.00[AMR][1000 genomes]
rs12270723	1.00[AMR][1000 genomes]
rs12270893	1.00[AMR][1000 genomes]
rs12271569	1.00[AMR][1000 genomes]
rs12273819	1.00[AMR][1000 genomes]
rs12278619	1.00[AMR][1000 genomes]
rs12279712	1.00[AMR][1000 genomes]
rs12279854	1.00[AMR][1000 genomes]
rs12281328	1.00[AMR][1000 genomes]
rs12283520	1.00[AMR][1000 genomes]
rs12283923	1.00[AMR][1000 genomes]
rs12288938	1.00[AMR][1000 genomes]
rs12290870	1.00[AMR][1000 genomes]
rs12291456	1.00[AMR][1000 genomes]
rs12293263	1.00[AMR][1000 genomes]
rs12294170	1.00[AMR][1000 genomes]
rs12294646	0.88[AFR][1000 genomes]
rs12295864	1.00[AMR][1000 genomes]
rs12296030	1.00[AMR][1000 genomes]
rs13377309	1.00[AMR][1000 genomes]
rs13377312	1.00[AMR][1000 genomes]
rs13377354	0.88[AFR][1000 genomes]
rs17885041	0.84[AFR][1000 genomes]
rs36039928	1.00[AMR][1000 genomes]
rs7937825	0.88[AFR][1000 genomes]
rs9971623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3384244	chr11:102195350-102220898	Active TSS Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1839485	chr11:102207851-102220279	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102188800-102216600	Weak transcription	HSMMtube	muscle
2	chr11:102189400-102216600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:102189400-102216800	Weak transcription	Right Ventricle	heart
4	chr11:102191200-102216800	Weak transcription	Aorta	Aorta
5	chr11:102191200-102217400	Weak transcription	Esophagus	oesophagus
6	chr11:102191600-102216600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:102191800-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:102194600-102212600	Weak transcription	Dnd41	blood
9	chr11:102198400-102217400	Weak transcription	Gastric	stomach
10	chr11:102200000-102216600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:102201600-102216600	Weak transcription	Colonic Mucosa	Colon
12	chr11:102203200-102216000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:102203600-102212600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:102203600-102214600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:102203600-102216600	Weak transcription	Adipose Nuclei	Adipose
16	chr11:102203600-102216600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:102203600-102217400	Weak transcription	Spleen	Spleen
18	chr11:102204400-102216600	Weak transcription	Small Intestine	intestine
19	chr11:102204400-102216800	Weak transcription	Pancreas	Pancrea
20	chr11:102204800-102212600	Weak transcription	Thymus	Thymus
21	chr11:102207200-102216600	Weak transcription	Left Ventricle	heart
22	chr11:102208000-102214600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:102208600-102216600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:102208800-102214200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:102209000-102216400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:102209000-102216400	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:102209200-102216600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:102209200-102216800	Weak transcription	Liver	Liver
29	chr11:102209400-102215600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:102209400-102217400	Weak transcription	Lung	lung
31	chr11:102209600-102216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:102209600-102216800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:102209800-102216600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:102209800-102216800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:102209800-102217200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:102210400-102216400	Weak transcription	Primary T cells from cord blood	blood
37	chr11:102210400-102216600	Weak transcription	Primary B cells from cord blood	blood
38	chr11:102210400-102216600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:102210400-102216600	Weak transcription	Fetal Intestine Large	intestine
40	chr11:102210600-102216600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:102210800-102212600	Enhancers	HepG2	liver
42	chr11:102210800-102212600	Weak transcription	Osteobl	bone
43	chr11:102211800-102215800	Enhancers	K562	blood
44	chr11:102212000-102212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:102212000-102213000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:102212200-102212600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:102212200-102212600	Enhancers	Stomach Mucosa	stomach
48	chr11:102212200-102212800	Enhancers	Primary hematopoietic stem cells	blood
49	chr11:102212200-102212800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr11:102212200-102212800	Enhancers	Hela-S3	cervix

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