Variant report

Variant	rs36039928
Chromosome Location	chr11:102257115-102257116
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102257070..102259604-chr11:102272964..102275237,2	K562	blood:
2	chr11:102216520..102219549-chr11:102256607..102260159,4	K562	blood:
3	chr11:102248264..102252607-chr11:102254187..102258026,4	K562	blood:
4	chr11:102255616..102257958-chr11:102322029..102324205,3	K562	blood:
5	chr11:102247498..102250986-chr11:102255222..102258637,4	K562	blood:
6	chr11:102256750..102259635-chr11:102260009..102261641,2	K562	blood:

Variant related genes	Relation type
ENSG00000255337	Chromatin interaction
ENSG00000152558	Chromatin interaction
ENSG00000110330	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10082693	1.00[AMR][1000 genomes]
rs10466639	1.00[AMR][1000 genomes]
rs11225219	1.00[AMR][1000 genomes]
rs11225223	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11225228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11225245	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11225246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270723	1.00[AMR][1000 genomes]
rs12270893	1.00[AMR][1000 genomes]
rs12271569	1.00[AMR][1000 genomes]
rs12273819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278619	1.00[AMR][1000 genomes]
rs12279712	1.00[AMR][1000 genomes]
rs12279854	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282166	0.84[AFR][1000 genomes]
rs12283520	1.00[AMR][1000 genomes]
rs12283923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291210	1.00[AFR][1000 genomes]
rs12291456	1.00[AMR][1000 genomes]
rs12293263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294170	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295864	1.00[AMR][1000 genomes]
rs12296030	1.00[AMR][1000 genomes]
rs13377309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377312	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971623	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
5	chr11:102239600-102259000	Weak transcription	Fetal Brain Male	brain
6	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:102245600-102258600	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:102245800-102257200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:102245800-102260800	Strong transcription	HSMM	muscle
13	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:102246200-102261800	Weak transcription	Gastric	stomach
17	chr11:102246200-102263800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:102246200-102267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:102246200-102274400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:102246200-102281000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:102246200-102281000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:102246200-102281000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:102246800-102277800	Weak transcription	Stomach Mucosa	stomach
24	chr11:102247400-102275400	Strong transcription	Primary B cells from cord blood	blood
25	chr11:102247800-102261800	Strong transcription	Liver	Liver
26	chr11:102247800-102263600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:102248200-102258000	Strong transcription	Osteobl	bone
28	chr11:102248600-102265600	Strong transcription	NH-A	brain
29	chr11:102249600-102261600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:102250200-102261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:102250400-102259000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:102250400-102261400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:102250600-102263800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:102250800-102259800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:102250800-102262000	Weak transcription	Colonic Mucosa	Colon
36	chr11:102250800-102264200	Weak transcription	Psoas Muscle	Psoas
37	chr11:102251000-102268400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:102251200-102267400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:102251400-102259200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:102251400-102271200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:102251600-102259200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:102251800-102261400	Weak transcription	Brain Substantia Nigra	brain
43	chr11:102252000-102260000	Weak transcription	Brain Anterior Caudate	brain
44	chr11:102252000-102261600	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:102252600-102260000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:102252600-102261200	Weak transcription	Brain Angular Gyrus	brain
47	chr11:102252800-102259400	Weak transcription	Fetal Brain Female	brain
48	chr11:102253000-102257800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:102253000-102259600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:102253200-102258800	Weak transcription	GM12878-XiMat	blood

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