Variant report

Variant	rs17883372
Chromosome Location	chr11:64952432-64952433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64952394-64952510	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:64946681-64957644	K562	blood:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64897351..64905868-chr11:64946257..64954528,24	K562	blood:
2	chr11:64899351..64904069-chr11:64950676..64953624,5	K562	blood:
3	chr11:64889868..64892172-chr11:64952017..64954494,2	MCF-7	breast:
4	chr11:64877702..64891058-chr11:64944203..64957091,32	K562	blood:
5	chr11:64937018..64939498-chr11:64950908..64953438,2	MCF-7	breast:
6	chr11:64943820..64945584-chr11:64952050..64953852,2	MCF-7	breast:
7	chr11:64875868..64888016-chr11:64945810..64953962,46	MCF-7	breast:
8	chr11:64948264..64950913-chr11:64951274..64954036,3	MCF-7	breast:
9	chr11:64950995..64952839-chr11:65029401..65031022,2	MCF-7	breast:
10	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
11	chr11:64898025..64904360-chr11:64945543..64952640,32	MCF-7	breast:
12	chr11:64646646..64648212-chr11:64949732..64952705,2	MCF-7	breast:
13	chr11:64888312..64893387-chr11:64951706..64955535,4	K562	blood:
14	chr11:64945380..64947486-chr11:64951371..64953143,2	K562	blood:
15	chr11:64878248..64881625-chr11:64951647..64953289,3	K562	blood:

No data

Variant related genes	Relation type
CAPN1	TF binding region
ENSG00000254614	TF binding region
ENSG00000149806	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000254614	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17880328	1.00[EUR][1000 genomes]
rs17880800	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17881673	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17885718	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58874511	1.00[EUR][1000 genomes]
rs59600966	1.00[EUR][1000 genomes]
rs7933743	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64950400-64952800	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr11:64950400-64953400	Weak transcription	Aorta	Aorta
3	chr11:64950400-64953400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:64950400-64953600	Weak transcription	Ovary	ovary
5	chr11:64950400-64954200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:64950400-64955400	Weak transcription	Small Intestine	intestine
7	chr11:64950400-64956200	Weak transcription	Brain Substantia Nigra	brain
8	chr11:64950400-64973200	Weak transcription	Fetal Kidney	kidney
9	chr11:64950600-64953200	Weak transcription	Brain Anterior Caudate	brain
10	chr11:64950600-64953400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:64950600-64953400	Weak transcription	Left Ventricle	heart
12	chr11:64950600-64953800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:64950600-64954000	Weak transcription	HSMMtube	muscle
14	chr11:64950600-64957200	Weak transcription	Psoas Muscle	Psoas
15	chr11:64950600-64992400	Weak transcription	Right Atrium	heart
16	chr11:64950800-64952800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr11:64950800-64953200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:64950800-64953400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:64950800-64956000	Weak transcription	HSMM	muscle
20	chr11:64951000-64952800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:64951000-64953000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:64951000-64953200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:64951000-64953200	Weak transcription	Osteobl	bone
24	chr11:64951000-64954000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:64951000-64954000	Weak transcription	GM12878-XiMat	blood
26	chr11:64951000-64955600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:64951000-64956200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:64951000-64956800	Weak transcription	NH-A	brain
29	chr11:64951000-64959000	Strong transcription	Thymus	Thymus
30	chr11:64951000-64959200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:64951000-64973600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:64951000-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:64951200-64953000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:64951200-64953200	Weak transcription	A549	lung
35	chr11:64951200-64953800	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:64951200-64954200	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:64951200-64958400	Strong transcription	NHLF	lung
38	chr11:64951200-64958800	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:64951200-64959800	Strong transcription	Primary T cells from cord blood	blood
40	chr11:64951200-64961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:64951200-64962800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:64951200-64963000	Strong transcription	Liver	Liver
43	chr11:64951200-64963000	Strong transcription	Fetal Stomach	stomach
44	chr11:64951200-64963200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:64951200-64963600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:64951200-64968400	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:64951200-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:64951400-64952600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:64951400-64952800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr11:64951400-64953200	Weak transcription	Fetal Lung	lung

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