Variant report

Variant	rs59600966
Chromosome Location	chr11:64944439-64944440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64877702..64891058-chr11:64944203..64957091,32	K562	blood:
2	chr11:64929865..64931948-chr11:64943946..64946417,2	MCF-7	breast:
3	chr11:64943825..64947169-chr11:64947454..64950649,5	K562	blood:
4	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
5	chr11:64943820..64945584-chr11:64952050..64953852,2	MCF-7	breast:
6	chr11:64892056..64894103-chr11:64941520..64944795,3	K562	blood:

Variant related genes	Relation type
ENSG00000255173	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000149806	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11828131	1.00[AMR][1000 genomes]
rs17880328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17880419	0.85[AMR][1000 genomes]
rs17880800	1.00[EUR][1000 genomes]
rs17881194	0.85[AMR][1000 genomes]
rs17881673	1.00[EUR][1000 genomes]
rs17883372	1.00[EUR][1000 genomes]
rs17885718	1.00[EUR][1000 genomes]
rs56815630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58874511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102692	0.85[AMR][1000 genomes]
rs7933743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942977	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64927400-64948400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:64933600-64948000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:64933800-64947600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:64933800-64947600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:64933800-64947600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:64933800-64948200	Weak transcription	Ovary	ovary
7	chr11:64934400-64947800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:64934600-64947800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:64935800-64947600	Weak transcription	Liver	Liver
10	chr11:64936800-64947600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:64937000-64948000	Weak transcription	Spleen	Spleen
12	chr11:64937000-64948000	Weak transcription	NHDF-Ad	bronchial
13	chr11:64937200-64947800	Weak transcription	NH-A	brain
14	chr11:64937200-64948000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:64937600-64947600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:64937600-64948000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:64937800-64948000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:64937800-64948200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:64940000-64948000	Weak transcription	Esophagus	oesophagus
20	chr11:64940800-64948000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:64941000-64948000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:64941000-64948000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:64941400-64947400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:64941400-64947600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:64941400-64947800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:64942400-64948000	Weak transcription	Placenta	Placenta
27	chr11:64942600-64946400	Weak transcription	HepG2	liver
28	chr11:64942800-64948000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:64943600-64945800	Weak transcription	K562	blood
30	chr11:64943800-64947800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:64944200-64947600	Weak transcription	Rectal Mucosa Donor 31	rectum

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