Variant report

Variant	rs17883451
Chromosome Location	chr11:75112641-75112642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:75112638-75112777	K562	blood:	n/a	n/a
2	POLR2A	chr11:75112622-75115811	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr11:75110119-75120367	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr11:75110255-75120255	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:75112310-75112758	MCF-7	breast:	n/a	n/a
6	POLR2A	chr11:75112455-75114654	HepG2	liver:	n/a	n/a
7	POLR2A	chr11:75112626-75112897	H1-hESC	embryonic stem cell:	n/a	n/a
8	MXI1	chr11:75110161-75113092	SK-N-SH	brain:	n/a	n/a
9	CTCF	chr11:75112614-75112788	K562	blood:	n/a	n/a
10	CTCF	chr11:75112560-75112710	A549	lung:	n/a	n/a
11	POLR2A	chr11:75110240-75112689	HUVEC	blood vessel:	n/a	n/a
12	CHD1	chr11:75110526-75112764	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr11:75110310-75118425	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:75112251-75113433	GM12878	blood:	n/a	n/a
15	POLR2A	chr11:75112155-75112802	K562	blood:	n/a	n/a
16	POLR2A	chr11:75111817-75112771	K562	blood:	n/a	n/a
17	CTCF	chr11:75112619-75112812	K562	blood:	n/a	n/a
18	POLR2A	chr11:75110251-75112657	PANC-1	pancreas:	n/a	n/a
19	POLR2A	chr11:75112221-75114842	GM12892	blood:	n/a	n/a
20	POLR2A	chr11:75110219-75118608	GM12878	blood:	n/a	n/a
21	CTCF	chr11:75112607-75112829	K562	blood:	n/a	n/a
22	WRNIP1	chr11:75112204-75113750	GM12878	blood:	n/a	n/a
23	POLR2A	chr11:75112207-75116154	GM12891	blood:	n/a	n/a
24	POLR2A	chr11:75110259-75112693	GM12878	blood:	n/a	n/a
25	POLR2A	chr11:75110149-75120406	PFSK-1	brain:	n/a	n/a
26	POLR2A	chr11:75110164-75120300	PANC-1	pancreas:	n/a	n/a
27	POLR2A	chr11:75110166-75120422	SK-N-MC	brain:	n/a	n/a
28	POLR2A	chr11:75112081-75112693	GM12892	blood:	n/a	n/a
29	POLR2A	chr11:75112090-75116413	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr11:75110217-75116378	GM12892	blood:	n/a	n/a
31	POLR2A	chr11:75112568-75112855	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr11:75110277-75120208	K562	blood:	n/a	n/a
33	POLR2A	chr11:75112629-75112797	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr11:75110319-75120266	K562	blood:	n/a	n/a
35	SP1	chr11:75112522-75112839	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr11:75112149-75112793	K562	blood:	n/a	n/a
37	MXI1	chr11:75112378-75112760	K562	blood:	n/a	n/a
38	HEY1	chr11:75112555-75116091	K562	blood:	n/a	n/a
39	POLR2A	chr11:75112566-75113212	GM12892	blood:	n/a	n/a
40	POLR2A	chr11:75112086-75120445	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr11:75110409-75120283	K562	blood:	n/a	n/a
42	CTCF	chr11:75112618-75112898	A549	lung:	n/a	n/a
43	POLR2A	chr11:75112209-75120442	K562	blood:	n/a	n/a
44	HCFC1	chr11:75109980-75113143	Hela-S3	cervix:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75110328..75112822-chr11:75272063..75275236,3	MCF-7	breast:
2	chr11:75112349..75114829-chr11:75258143..75260028,2	K562	blood:
3	chr11:75109851..75112831-chr11:75160838..75163878,3	MCF-7	breast:
4	chr11:75111521..75113837-chr11:75523467..75525934,2	K562	blood:
5	chr11:75111782..75113849-chr11:75133986..75135853,2	K562	blood:
6	chr11:75044252..75049039-chr11:75109874..75112804,4	K562	blood:
7	chr11:75101158..75102844-chr11:75112154..75113952,2	MCF-7	breast:
8	chr11:75109363..75113212-chr11:75271581..75274783,5	MCF-7	breast:
9	chr11:75110249..75114230-chr11:75150071..75153287,3	K562	blood:
10	chr11:75112364..75115138-chr11:75178491..75181185,2	K562	blood:
11	chr11:75111438..75113575-chr11:75153737..75155767,2	K562	blood:
12	chr11:75061972..75065288-chr11:75110522..75113942,5	K562	blood:

No data

Variant related genes	Relation type
SNORD15B	TF binding region
ENSG00000255507	Chromatin interaction
ENSG00000199090	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000137486	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12277045	0.91[YRI][hapmap]
rs17133945	0.89[AFR][1000 genomes]
rs17883509	1.00[AFR][1000 genomes]
rs2279129	1.00[ASW][hapmap]
rs2279130	1.00[ASW][hapmap]
rs7107476	0.91[YRI][hapmap]
rs7119129	0.94[AFR][1000 genomes]
rs7122426	0.91[AFR][1000 genomes]
rs7123178	1.00[AFR][1000 genomes]
rs7934329	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75110400-75112800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:75110400-75113000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:75110400-75113000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:75110600-75113400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:75110600-75114800	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr11:75110800-75114000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
7	chr11:75110800-75114400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:75110800-75114600	Transcr. at gene 5' and 3'	A549	lung
9	chr11:75111000-75113600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
10	chr11:75111000-75114200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
11	chr11:75111000-75114200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
12	chr11:75111000-75114200	Transcr. at gene 5' and 3'	NHEK	skin
13	chr11:75111200-75113200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
14	chr11:75111200-75113400	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
15	chr11:75111200-75114000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
16	chr11:75111200-75114200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
17	chr11:75111200-75114400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:75111200-75115600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
19	chr11:75111400-75113200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:75111400-75113600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
21	chr11:75111400-75113800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:75111400-75114200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
23	chr11:75111400-75115400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:75111600-75113000	Weak transcription	Aorta	Aorta
25	chr11:75111600-75114600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:75111800-75112800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:75111800-75112800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr11:75111800-75112800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:75111800-75112800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:75111800-75112800	Weak transcription	Brain Substantia Nigra	brain
31	chr11:75111800-75113000	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:75111800-75113000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr11:75111800-75113000	Enhancers	Stomach Mucosa	stomach
34	chr11:75111800-75113600	Enhancers	Right Atrium	heart
35	chr11:75111800-75116200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:75112000-75112800	Enhancers	Brain Hippocampus Middle	brain
37	chr11:75112000-75112800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
38	chr11:75112000-75112800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
39	chr11:75112000-75112800	Weak transcription	Fetal Kidney	kidney
40	chr11:75112000-75113000	Weak transcription	Ovary	ovary
41	chr11:75112000-75113000	Weak transcription	Spleen	Spleen
42	chr11:75112000-75113200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:75112000-75113200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
44	chr11:75112000-75113200	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
45	chr11:75112000-75113400	Genic enhancers	Primary B cells from cord blood	blood
46	chr11:75112000-75113400	Genic enhancers	Brain Anterior Caudate	brain
47	chr11:75112000-75113400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:75112000-75113600	Genic enhancers	Liver	Liver
49	chr11:75112000-75113800	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr11:75112000-75113800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links