Variant report

Variant	rs7107476
Chromosome Location	chr11:75125053-75125054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75123559..75127434-chr11:75138022..75142436,6	MCF-7	breast:
2	chr11:75122124..75127716-chr11:75129624..75133072,6	MCF-7	breast:
3	chr11:75121805..75124460-chr11:75124847..75127735,2	K562	blood:
4	chr11:75121805..75124577-chr11:75124847..75127280,2	K562	blood:
5	chr11:75124911..75127716-chr11:75131306..75134376,3	K562	blood:
6	chr11:75124995..75127197-chr11:75130235..75131924,2	K562	blood:

Variant related genes	Relation type
ENSG00000149243	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12277045	1.00[YRI][hapmap]
rs17883451	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
4	nsv897921	chr11:75115893-75147661	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897922	chr11:75116733-75147661	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75115600-75132200	Weak transcription	Fetal Brain Male	brain
2	chr11:75117000-75135200	Weak transcription	Right Ventricle	heart
3	chr11:75117400-75139000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:75117800-75125400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:75118200-75125200	Weak transcription	Psoas Muscle	Psoas
6	chr11:75118200-75129800	Weak transcription	Hela-S3	cervix
7	chr11:75118200-75139000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:75118200-75139600	Weak transcription	Small Intestine	intestine
9	chr11:75119400-75129200	Weak transcription	Stomach Mucosa	stomach
10	chr11:75119400-75139800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:75119600-75131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:75120400-75134200	Weak transcription	Right Atrium	heart
13	chr11:75120600-75126200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:75121800-75127400	Strong transcription	Brain Germinal Matrix	brain
15	chr11:75122200-75126600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:75122200-75126800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:75122200-75128400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:75122200-75129800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:75122200-75130200	Strong transcription	Fetal Brain Female	brain
20	chr11:75122400-75127400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:75122400-75127400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:75122600-75125200	Genic enhancers	A549	lung
23	chr11:75122600-75125400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:75122600-75126400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:75122600-75126800	Strong transcription	Lung	lung
26	chr11:75122600-75127400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:75122600-75127400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:75122600-75127400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:75122600-75128400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:75122600-75129000	Strong transcription	Fetal Thymus	thymus
31	chr11:75122600-75129400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:75122600-75129400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:75122600-75130600	Strong transcription	Fetal Intestine Small	intestine
34	chr11:75122800-75125200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:75122800-75125400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:75122800-75126200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:75122800-75126200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:75122800-75126200	Strong transcription	Adipose Nuclei	Adipose
39	chr11:75122800-75126200	Strong transcription	Brain Hippocampus Middle	brain
40	chr11:75122800-75126200	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr11:75122800-75126200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:75122800-75126200	Strong transcription	Gastric	stomach
43	chr11:75122800-75126200	Strong transcription	Rectal Smooth Muscle	rectum
44	chr11:75122800-75126400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr11:75122800-75126400	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr11:75122800-75126400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:75122800-75126400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:75122800-75126400	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:75122800-75126400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr11:75122800-75126400	Strong transcription	Liver	Liver

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