Variant report

Variant	rs17885996
Chromosome Location	chr22:29119163-29119164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29117174..29121072-chr22:29214167..29218660,4	MCF-7	breast:
2	chr22:29117650..29119944-chr22:29134388..29136343,2	MCF-7	breast:
3	chr22:29118802..29121164-chr22:29193533..29196083,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226471	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16986630	1.00[AMR][1000 genomes]
rs17879919	1.00[AMR][1000 genomes]
rs17882867	1.00[AMR][1000 genomes]
rs17885975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv9895	chr22:29029961-29184277	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1064624	chr22:29065528-29130728	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv513775	chr22:29083731-29137822	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv517951	chr22:29105558-29135889	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29076200-29137600	Weak transcription	Esophagus	oesophagus
2	chr22:29076400-29119200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr22:29076400-29129400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr22:29079600-29130200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:29082800-29137600	Weak transcription	Spleen	Spleen
6	chr22:29083000-29126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:29090200-29129000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr22:29090600-29137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr22:29090600-29137200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr22:29091000-29120200	Weak transcription	Placenta	Placenta
11	chr22:29093600-29121800	Weak transcription	Small Intestine	intestine
12	chr22:29093600-29132000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:29093800-29126600	Weak transcription	Gastric	stomach
14	chr22:29094600-29125000	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr22:29097000-29130800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr22:29099800-29129000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr22:29100400-29137200	Weak transcription	Pancreas	Pancrea
18	chr22:29101600-29131000	Strong transcription	Dnd41	blood
19	chr22:29102400-29119600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr22:29103600-29124800	Weak transcription	GM12878-XiMat	blood
21	chr22:29103600-29132200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr22:29105600-29137200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr22:29106000-29129200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr22:29107600-29136800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr22:29108000-29121000	Weak transcription	K562	blood
26	chr22:29108400-29124400	Weak transcription	Psoas Muscle	Psoas
27	chr22:29108400-29137200	Weak transcription	Right Atrium	heart
28	chr22:29108800-29120400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr22:29108800-29126600	Weak transcription	Fetal Muscle Leg	muscle
30	chr22:29108800-29129200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr22:29109000-29129800	Weak transcription	Fetal Lung	lung
32	chr22:29109000-29137000	Weak transcription	HMEC	breast
33	chr22:29109000-29137200	Weak transcription	Liver	Liver
34	chr22:29109000-29137200	Weak transcription	HSMM	muscle
35	chr22:29109200-29120400	Weak transcription	HepG2	liver
36	chr22:29109200-29124000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr22:29109200-29124400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr22:29109200-29128800	Weak transcription	NHEK	skin
39	chr22:29110600-29125200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr22:29111000-29124600	Weak transcription	NHDF-Ad	bronchial
41	chr22:29111200-29124400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr22:29111200-29136600	Weak transcription	HUVEC	blood vessel
43	chr22:29112000-29123600	Weak transcription	Hela-S3	cervix
44	chr22:29112000-29137600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr22:29112200-29129400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr22:29112800-29121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr22:29113800-29131200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr22:29114000-29125200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr22:29114200-29125400	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr22:29114800-29122400	Strong transcription	H1 Cell Line	embryonic stem cell

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