Variant report

Variant	rs178940
Chromosome Location	chr17:34062686-34062687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs226420	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs226421	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226422	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs178940	RASL10B	cis	Thyroid	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34058600-34064600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:34059600-34067200	Weak transcription	Spleen	Spleen
3	chr17:34059600-34068000	Weak transcription	Right Ventricle	heart
4	chr17:34059800-34063400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:34059800-34065000	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:34060000-34064400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:34060000-34065200	Weak transcription	Brain Anterior Caudate	brain
8	chr17:34060000-34065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:34060000-34065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:34060000-34068000	Weak transcription	Right Atrium	heart
11	chr17:34060400-34062800	Weak transcription	Fetal Intestine Small	intestine
12	chr17:34060400-34068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr17:34060600-34067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:34060800-34067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:34061000-34063400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:34061800-34063000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:34062400-34063200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:34062600-34063200	Weak transcription	Brain Germinal Matrix	brain
19	chr17:34062600-34068000	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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