Variant report

Variant	rs226421
Chromosome Location	chr17:34061989-34061990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs178940	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226420	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs226422	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs321597	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs226421	RASL10B	cis	Thyroid	GTEx
rs226421	SLFN5	cis	parietal	SCAN
rs226421	CCL18	cis	lymphoblastoid	seeQTL
rs226421	PIGW	cis	cerebellum	SCAN
rs226421	ZNF830	cis	parietal	SCAN
rs226421	SUZ12P	cis	parietal	SCAN
rs226421	RFFL	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34058600-34064600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:34059400-34062000	Weak transcription	Gastric	stomach
3	chr17:34059600-34067200	Weak transcription	Spleen	Spleen
4	chr17:34059600-34068000	Weak transcription	Right Ventricle	heart
5	chr17:34059800-34063400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr17:34059800-34065000	Weak transcription	Brain Hippocampus Middle	brain
7	chr17:34060000-34062400	Weak transcription	Lung	lung
8	chr17:34060000-34064400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:34060000-34065200	Weak transcription	Brain Anterior Caudate	brain
10	chr17:34060000-34065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:34060000-34065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:34060000-34068000	Weak transcription	Right Atrium	heart
13	chr17:34060400-34062800	Weak transcription	Fetal Intestine Small	intestine
14	chr17:34060400-34068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr17:34060600-34067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:34060800-34067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr17:34061000-34063400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr17:34061400-34062400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:34061800-34063000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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