Variant report

Variant	rs1790234
Chromosome Location	chr11:94378233-94378234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs487814	0.88[AMR][1000 genomes]
rs539786	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs570186	0.80[AMR][1000 genomes]
rs572309	0.80[AMR][1000 genomes]
rs576108	0.80[AMR][1000 genomes]
rs592834	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs621995	0.80[AMR][1000 genomes]
rs623404	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs635232	0.80[AMR][1000 genomes]
rs649944	0.80[AMR][1000 genomes]
rs656256	0.81[AMR][1000 genomes]
rs686807	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94372800-94381200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:94374400-94380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:94374600-94382400	Weak transcription	Placenta	Placenta
4	chr11:94374800-94378800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr11:94374800-94380600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:94374800-94380600	Weak transcription	Adipose Nuclei	Adipose
7	chr11:94374800-94383600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:94375200-94378600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:94377200-94379200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:94377200-94380400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:94377200-94380600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:94377400-94380600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:94377400-94383600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:94377800-94378800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
15	chr11:94377800-94378800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:94377800-94378800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:94378000-94379400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
18	chr11:94378000-94380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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