Variant report

Variant	rs1792170
Chromosome Location	chr11:73613857-73613858
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73490665..73492196-chr11:73612144..73614771,2	MCF-7	breast:
2	chr11:73277014..73278822-chr11:73613258..73614797,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10793067	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898946	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1095399	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235960	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1632159	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1670537	0.83[ASN][1000 genomes]
rs1670540	0.83[ASN][1000 genomes]
rs1670543	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1670549	0.81[ASN][1000 genomes]
rs1670551	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1670557	0.83[ASN][1000 genomes]
rs1670559	0.82[ASN][1000 genomes]
rs1670562	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1670564	0.83[ASN][1000 genomes]
rs1670565	0.83[ASN][1000 genomes]
rs1670569	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1792154	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1792156	0.82[ASN][1000 genomes]
rs1792160	0.82[ASN][1000 genomes]
rs1792161	0.82[ASN][1000 genomes]
rs1792176	0.81[ASN][1000 genomes]
rs1792183	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1792184	0.83[ASN][1000 genomes]
rs1792198	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2444601	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2511270	0.80[ASN][1000 genomes]
rs2511271	0.81[ASN][1000 genomes]
rs2511272	0.83[ASN][1000 genomes]
rs2515093	0.83[ASN][1000 genomes]
rs612914	0.81[EUR][1000 genomes]
rs7934784	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588800-73622000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73588800-73623000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
4	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
5	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
6	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
7	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:73591600-73618000	Weak transcription	K562	blood
9	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:73600400-73618000	Weak transcription	Fetal Heart	heart
11	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
12	chr11:73601600-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:73602000-73622800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:73602000-73624000	Weak transcription	Psoas Muscle	Psoas
15	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:73604400-73623400	Weak transcription	Fetal Kidney	kidney
17	chr11:73605200-73618400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:73606600-73630000	Weak transcription	A549	lung
19	chr11:73606800-73638200	Weak transcription	NHLF	lung
20	chr11:73607200-73628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:73609600-73614200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73609600-73614200	Strong transcription	Fetal Muscle Leg	muscle
23	chr11:73609600-73614400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:73609600-73614400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:73609600-73614600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:73609600-73614600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:73609800-73614200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:73609800-73614400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:73609800-73614400	Strong transcription	Liver	Liver
30	chr11:73609800-73614400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr11:73609800-73614600	Strong transcription	Primary B cells from cord blood	blood
32	chr11:73610000-73614200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr11:73610000-73614400	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:73610000-73614600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:73610000-73614800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr11:73610200-73614400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:73610200-73614400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:73610200-73614600	Strong transcription	Fetal Intestine Large	intestine
39	chr11:73610200-73615000	Strong transcription	Fetal Intestine Small	intestine
40	chr11:73610200-73616600	Strong transcription	Fetal Stomach	stomach
41	chr11:73610400-73618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:73610400-73620200	Weak transcription	HMEC	breast
43	chr11:73610600-73614400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:73611000-73628200	Weak transcription	Gastric	stomach
45	chr11:73611200-73628600	Weak transcription	Esophagus	oesophagus
46	chr11:73611600-73615800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:73611600-73616000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:73611600-73616200	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:73611600-73618000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:73611600-73618200	Weak transcription	GM12878-XiMat	blood

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