Variant report

Variant	rs7934784
Chromosome Location	chr11:73603797-73603798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73586755..73589677-chr11:73602483..73604395,2	MCF-7	breast:
2	chr11:73603516..73606235-chr11:73619849..73622149,2	K562	blood:

Variant related genes	Relation type
ENSG00000181924	Chromatin interaction
ENSG00000175575	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10793067	0.83[ASN][1000 genomes]
rs10898946	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1095399	0.81[ASN][1000 genomes]
rs1632159	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1670537	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1670540	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1670543	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1670551	0.85[ASN][1000 genomes]
rs1670557	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1670559	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1670562	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1670564	0.80[ASN][1000 genomes]
rs1670565	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1670570	0.80[ASN][1000 genomes]
rs1792154	0.84[ASN][1000 genomes]
rs1792156	0.81[EUR][1000 genomes]
rs1792165	0.80[ASN][1000 genomes]
rs1792170	0.84[ASN][1000 genomes]
rs1792183	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1792184	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1792193	0.81[ASN][1000 genomes]
rs1792198	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2444601	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2444603	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2444606	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511272	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2515093	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1035977	chr11:73581224-73617653	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73588600-73610200	Weak transcription	Gastric	stomach
2	chr11:73588600-73610200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:73588600-73611200	Weak transcription	Aorta	Aorta
4	chr11:73588800-73604200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:73588800-73604800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:73588800-73606200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:73588800-73607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:73588800-73610200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:73588800-73610600	Weak transcription	Spleen	Spleen
10	chr11:73588800-73610800	Weak transcription	Lung	lung
11	chr11:73588800-73610800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:73588800-73611200	Weak transcription	Right Ventricle	heart
13	chr11:73588800-73622000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:73588800-73623000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:73588800-73625200	Weak transcription	Small Intestine	intestine
16	chr11:73588800-73630000	Weak transcription	Colonic Mucosa	Colon
17	chr11:73588800-73630200	Weak transcription	HUVEC	blood vessel
18	chr11:73589000-73606000	Weak transcription	A549	lung
19	chr11:73589000-73610000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:73589000-73610200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:73589000-73610200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:73589000-73630200	Weak transcription	Fetal Brain Male	brain
23	chr11:73589200-73611200	Weak transcription	Brain Substantia Nigra	brain
24	chr11:73589400-73609800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:73589400-73610000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:73589400-73629200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:73590000-73610200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:73590000-73611200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:73591200-73610200	Weak transcription	Pancreas	Pancrea
30	chr11:73591400-73605600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:73591400-73610200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:73591400-73610200	Weak transcription	Esophagus	oesophagus
33	chr11:73591600-73618000	Weak transcription	K562	blood
34	chr11:73594200-73603800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:73595600-73604200	Weak transcription	Thymus	Thymus
36	chr11:73595600-73610200	Weak transcription	Ovary	ovary
37	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr11:73597000-73606400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:73597200-73607200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:73597400-73604200	Strong transcription	Placenta	Placenta
41	chr11:73597400-73605400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:73597400-73605400	Strong transcription	Liver	Liver
43	chr11:73597800-73605200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:73597800-73606400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:73597800-73607200	Strong transcription	Fetal Muscle Leg	muscle
46	chr11:73598000-73606400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:73598000-73606600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr11:73598000-73607000	Strong transcription	Fetal Intestine Large	intestine
49	chr11:73598200-73603800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:73598200-73605800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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