Variant report
| Variant | rs179274 |
|---|---|
| Chromosome Location | chr5:118987108-118987109 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10071133 | 0.92[EUR][1000 genomes] |
| rs12153752 | 0.92[EUR][1000 genomes] |
| rs13152919 | 0.92[EUR][1000 genomes] |
| rs13153368 | 0.92[EUR][1000 genomes] |
| rs13153472 | 0.91[EUR][1000 genomes] |
| rs162197 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs170646 | 0.84[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1972629 | 0.92[EUR][1000 genomes] |
| rs2194055 | 0.92[EUR][1000 genomes] |
| rs2404819 | 0.92[EUR][1000 genomes] |
| rs2545858 | 0.92[EUR][1000 genomes] |
| rs328647 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs328649 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs328650 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs329144 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs330195 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6897417 | 0.92[EUR][1000 genomes] |
| rs780425 | 0.92[EUR][1000 genomes] |
| rs780430 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs780431 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9327113 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427732 | chr5:118730999-119034741 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024455 | chr5:118770429-119487982 | Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016271 | chr5:118836891-119487982 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv882778 | chr5:118972113-119384039 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:118986600-118987800 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 2 | chr5:118987000-118988600 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
