Variant report

Variant	rs1794625
Chromosome Location	chr6:36535146-36535147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs593060	1.00[AMR][1000 genomes]
rs604839	1.00[AMR][1000 genomes]
rs635738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs657238	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
2	chr6:36533800-36535200	Enhancers	Fetal Intestine Small	intestine
3	chr6:36534000-36535600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:36534200-36535200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:36534600-36535800	Flanking Active TSS	HepG2	liver
6	chr6:36534800-36538000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:36535000-36535200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:36535000-36535600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:36535000-36535600	Active TSS	A549	lung
10	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
11	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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