Variant report

Variant	rs604839
Chromosome Location	chr6:36526855-36526856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36525931..36527462-chr6:36570238..36572725,2	MCF-7	breast:
2	chr6:36523233..36527454-chr6:36560402..36564632,7	MCF-7	breast:
3	chr6:36525777..36528284-chr6:36528630..36530476,2	MCF-7	breast:
4	chr6:36521727..36524987-chr6:36525376..36528528,3	K562	blood:
5	chr6:36525207..36527489-chr6:36560821..36563738,6	MCF-7	breast:
6	chr6:36523665..36533327-chr6:36560183..36564350,15	K562	blood:
7	chr6:36525623..36528471-chr6:36530038..36531667,2	MCF-7	breast:
8	chr6:36524883..36528605-chr6:36543628..36546021,5	MCF-7	breast:
9	chr6:36526847..36533401-chr6:36560234..36564615,11	K562	blood:
10	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:
11	chr6:36521237..36523227-chr6:36525376..36528336,2	K562	blood:
12	chr6:36524196..36527132-chr6:36635202..36638000,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1794625	1.00[AMR][1000 genomes]
rs4713985	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs593060	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635738	1.00[AMR][1000 genomes]
rs657238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36523000-36527000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:36523400-36528400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:36524000-36529600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:36524800-36527600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:36525200-36531400	Weak transcription	HSMMtube	muscle
6	chr6:36525800-36530200	Weak transcription	A549	lung
7	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
8	chr6:36526600-36527400	Enhancers	HepG2	liver
9	chr6:36526600-36527400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:36526600-36527600	Enhancers	Adipose Nuclei	Adipose
11	chr6:36526800-36527000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:36526800-36527400	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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