Variant report

Variant	rs1795862
Chromosome Location	chr12:104933149-104933150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104931194..104933511-chr12:104936076..104938027,2	MCF-7	breast:
2	chr12:104928335..104930569-chr12:104932638..104934714,2	K562	blood:
3	chr12:104928335..104930569-chr12:104932517..104934714,3	K562	blood:
4	chr12:104931641..104933336-chr12:104935789..104938174,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11613208	0.88[CEU][hapmap]
rs12829137	0.82[CHB][hapmap]
rs12829561	0.82[CHB][hapmap]
rs1553836	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1553839	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1625417	0.92[EUR][1000 genomes]
rs1626422	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628116	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1704889	0.82[CHB][hapmap]
rs1704903	0.96[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs1704905	0.94[EUR][1000 genomes]
rs1704915	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704916	0.96[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs1704917	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1704918	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704921	0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs1704922	0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs1704924	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704925	0.96[CEU][hapmap];0.97[GIH][hapmap];0.81[LWK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704926	0.96[CEU][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704927	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1704929	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795851	0.96[CEU][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs1795852	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1795853	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1795854	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1795855	0.96[CEU][hapmap];0.86[GIH][hapmap];0.81[LWK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1795856	0.92[CEU][hapmap];0.86[GIH][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1795857	0.96[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1795859	0.96[CEU][hapmap];0.86[GIH][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1795861	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1795864	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1795865	0.85[ASN][1000 genomes]
rs1795867	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1795868	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1795870	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1795872	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1973589	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2055861	0.96[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2665739	0.82[CHB][hapmap]
rs2665748	0.96[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs2706273	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313325	0.82[CHB][hapmap]
rs6539159	0.88[CEU][hapmap]
rs7968613	0.88[CEU][hapmap]
rs907097	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104915600-104936600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:104918000-104934200	Weak transcription	A549	lung
3	chr12:104919200-104935000	Weak transcription	Primary T cells from cord blood	blood
4	chr12:104921400-104939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:104924800-104939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:104927200-104943000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:104928600-104934200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr12:104928600-104935400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr12:104928600-104939000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr12:104929200-104934200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:104929200-104934200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:104929200-104934200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:104929200-104934400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:104929200-104934400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:104929200-104934600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:104929200-104939000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr12:104929200-104939000	Weak transcription	Lung	lung
18	chr12:104929200-104940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:104929200-104942800	Weak transcription	Pancreas	Pancrea
20	chr12:104929400-104933600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr12:104929400-104934200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr12:104929400-104934200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:104929400-104934200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:104929400-104934200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:104929400-104934200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr12:104929400-104934200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:104929400-104935400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr12:104929600-104934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:104929600-104934400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:104930200-104934400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:104930200-104957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:104930400-104934000	Weak transcription	Esophagus	oesophagus
33	chr12:104930400-104934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:104930400-104934200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr12:104930600-104939000	Weak transcription	Spleen	Spleen
36	chr12:104930600-104939200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr12:104930800-104940800	Weak transcription	Colon Smooth Muscle	Colon
38	chr12:104930800-104943800	Weak transcription	Small Intestine	intestine
39	chr12:104931000-104934200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr12:104931000-104934200	Weak transcription	Fetal Thymus	thymus
41	chr12:104931000-104934400	Weak transcription	Osteobl	bone
42	chr12:104931000-104934600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr12:104931000-104934600	Weak transcription	NHDF-Ad	bronchial
44	chr12:104931200-104934200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:104931200-104936400	Weak transcription	Thymus	Thymus
46	chr12:104931200-104936400	Weak transcription	GM12878-XiMat	blood
47	chr12:104931200-104938200	Weak transcription	Placenta	Placenta
48	chr12:104931200-104938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr12:104931200-104939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr12:104931200-104940200	Weak transcription	Primary B cells from cord blood	blood

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