Variant report

Variant	rs1795865
Chromosome Location	chr12:104937331-104937332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104935546..104938743-chr12:104941604..104945727,4	MCF-7	breast:
2	chr12:104931641..104933336-chr12:104935789..104938174,2	K562	blood:
3	chr12:104931194..104933511-chr12:104936076..104938027,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1553836	0.89[ASN][1000 genomes]
rs1553839	0.89[ASN][1000 genomes]
rs1626422	0.89[ASN][1000 genomes]
rs1628116	0.89[ASN][1000 genomes]
rs1704889	0.88[ASN][1000 genomes]
rs1704902	0.80[EUR][1000 genomes]
rs1704917	0.89[ASN][1000 genomes]
rs1704923	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1704928	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1704929	0.85[ASN][1000 genomes]
rs1795862	0.85[ASN][1000 genomes]
rs1795864	0.85[ASN][1000 genomes]
rs1795867	0.89[ASN][1000 genomes]
rs1795868	0.89[ASN][1000 genomes]
rs1795870	0.89[ASN][1000 genomes]
rs1795872	0.89[ASN][1000 genomes]
rs1973589	0.89[ASN][1000 genomes]
rs2665739	0.88[ASN][1000 genomes]
rs2665740	0.88[ASN][1000 genomes]
rs2706273	0.85[ASN][1000 genomes]
rs313325	0.88[ASN][1000 genomes]
rs865606	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104921400-104939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:104924800-104939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:104927200-104943000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:104928600-104939000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:104929200-104939000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:104929200-104939000	Weak transcription	Lung	lung
7	chr12:104929200-104940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:104929200-104942800	Weak transcription	Pancreas	Pancrea
9	chr12:104930200-104957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr12:104930600-104939000	Weak transcription	Spleen	Spleen
11	chr12:104930600-104939200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:104930800-104940800	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:104930800-104943800	Weak transcription	Small Intestine	intestine
14	chr12:104931200-104938200	Weak transcription	Placenta	Placenta
15	chr12:104931200-104938800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:104931200-104939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr12:104931200-104940200	Weak transcription	Primary B cells from cord blood	blood
18	chr12:104933200-104940200	Weak transcription	K562	blood
19	chr12:104933600-104941600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:104933800-104938600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:104934400-104939000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr12:104934600-104938600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr12:104934600-104939000	Weak transcription	Fetal Thymus	thymus
24	chr12:104934800-104938600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr12:104934800-104938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr12:104934800-104939000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr12:104935000-104938800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:104935200-104937600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr12:104935200-104947400	Weak transcription	Aorta	Aorta
30	chr12:104935400-104938600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:104935400-104938600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr12:104935400-104938600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr12:104935400-104943000	Weak transcription	A549	lung
34	chr12:104935400-104946400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:104935400-104947000	Weak transcription	Primary T cells from cord blood	blood
36	chr12:104935600-104938600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:104935600-104938600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:104935600-104938600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr12:104935600-104938600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:104935800-104938600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:104935800-104938600	Weak transcription	Brain Germinal Matrix	brain
42	chr12:104935800-104940600	Weak transcription	Brain Anterior Caudate	brain
43	chr12:104935800-104943800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr12:104936000-104937400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:104936000-104939600	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr12:104936200-104938800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr12:104936800-104938600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr12:104936800-104939000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr12:104937000-104937400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:104937000-104941000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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