Variant report

Variant	rs179704
Chromosome Location	chr14:31472600-31472601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31470358..31472659-chr14:31494008..31496265,3	MCF-7	breast:
2	chr14:31471843..31474502-chr14:31478571..31481121,2	K562	blood:
3	chr14:31471923..31474357-chr14:31505063..31507952,2	K562	blood:
4	chr14:31469435..31474245-chr14:31493637..31497268,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100478	Chromatin interaction
ENSG00000196792	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10129452	0.81[EUR][1000 genomes]
rs10135412	0.83[ASN][1000 genomes]
rs10138452	0.87[ASN][1000 genomes]
rs10140025	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10140238	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10145545	0.83[ASN][1000 genomes]
rs10147690	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10151219	0.82[ASN][1000 genomes]
rs1033559	0.82[ASN][1000 genomes]
rs10444696	0.96[ASN][1000 genomes]
rs10872848	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12019004	0.86[ASN][1000 genomes]
rs12436401	0.83[ASN][1000 genomes]
rs12590617	0.87[ASN][1000 genomes]
rs12884687	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17448194	0.84[ASN][1000 genomes]
rs179698	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179699	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs179702	0.99[ASN][1000 genomes]
rs179705	0.97[ASN][1000 genomes]
rs179706	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs179707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs179709	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs179710	0.96[ASN][1000 genomes]
rs179711	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs179712	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs179714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179715	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs179717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs179718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179720	0.96[ASN][1000 genomes]
rs179721	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179722	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs179725	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs179726	0.92[ASN][1000 genomes]
rs179731	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs179733	0.92[ASN][1000 genomes]
rs179734	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs179736	0.92[ASN][1000 genomes]
rs179737	0.92[ASN][1000 genomes]
rs179743	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs179744	0.92[ASN][1000 genomes]
rs1884057	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2024662	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2144040	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2179934	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378813	0.84[ASN][1000 genomes]
rs28535014	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28648046	0.87[ASN][1000 genomes]
rs3784157	0.84[EUR][1000 genomes]
rs3898581	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4340230	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981811	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981812	0.87[ASN][1000 genomes]
rs6571380	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66463317	0.94[ASN][1000 genomes]
rs67209135	0.86[ASN][1000 genomes]
rs7140306	0.84[EUR][1000 genomes]
rs7140667	0.85[EUR][1000 genomes]
rs7143488	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149411	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150581	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150642	0.92[ASN][1000 genomes]
rs7153141	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7154042	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155894	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7350754	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8018402	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9322865	0.84[EUR][1000 genomes]
rs9322869	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31442400-31494400	Weak transcription	Gastric	stomach
2	chr14:31443400-31493800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:31444000-31472800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:31458600-31494000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:31461200-31492400	Weak transcription	Fetal Kidney	kidney
6	chr14:31461200-31494400	Weak transcription	Small Intestine	intestine
7	chr14:31461400-31487400	Weak transcription	Right Ventricle	heart
8	chr14:31464200-31493600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:31464400-31492400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:31465400-31492400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:31465600-31474000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:31465600-31474000	Weak transcription	Left Ventricle	heart
13	chr14:31465600-31480400	Weak transcription	Ovary	ovary
14	chr14:31465600-31487400	Weak transcription	Spleen	Spleen
15	chr14:31466400-31490000	Weak transcription	NHDF-Ad	bronchial
16	chr14:31466600-31474800	Weak transcription	Esophagus	oesophagus
17	chr14:31467000-31474800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:31467800-31473800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:31467800-31481800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:31467800-31484400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:31467800-31485000	Weak transcription	Hela-S3	cervix
22	chr14:31467800-31487400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:31467800-31487400	Weak transcription	Thymus	Thymus
24	chr14:31467800-31492000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr14:31467800-31493000	Weak transcription	HSMMtube	muscle
26	chr14:31467800-31493400	Weak transcription	Brain Angular Gyrus	brain
27	chr14:31468000-31474000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:31468000-31474000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:31468000-31474000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:31468000-31474200	Weak transcription	Liver	Liver
31	chr14:31468000-31474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:31468000-31481800	Weak transcription	Lung	lung
33	chr14:31468000-31487600	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:31468000-31489200	Weak transcription	NHLF	lung
35	chr14:31468000-31490200	Weak transcription	NH-A	brain
36	chr14:31468000-31493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:31468200-31472600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:31468200-31472800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:31468200-31474400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr14:31468200-31475200	Weak transcription	Osteobl	bone
41	chr14:31468200-31487600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr14:31468400-31493200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:31468400-31493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:31468600-31472600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:31468600-31473400	Weak transcription	Fetal Intestine Large	intestine
46	chr14:31468600-31474000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:31468600-31474200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:31468600-31474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:31468600-31474200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:31468600-31476000	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links