Variant report

Variant	rs7155894
Chromosome Location	chr14:31465241-31465242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31462254..31468952-chr14:31492285..31496312,7	MCF-7	breast:
2	chr14:31464216..31466853-chr14:31676054..31677985,2	MCF-7	breast:
3	chr14:31458647..31460710-chr14:31463564..31465601,2	K562	blood:
4	chr14:31463269..31470932-chr14:31491620..31497354,8	K562	blood:

Variant related genes	Relation type
ENSG00000196792	Chromatin interaction
ENSG00000100478	Chromatin interaction
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10129452	0.82[EUR][1000 genomes]
rs10135412	0.84[ASN][1000 genomes]
rs10138011	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs10138452	0.88[ASN][1000 genomes]
rs10140025	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10140238	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10145545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10147690	1.00[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10151219	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1033559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10444696	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10483357	0.83[CHB][hapmap]
rs10872848	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11621991	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12019004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12436401	0.84[ASN][1000 genomes]
rs12590617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12884687	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17448194	0.85[ASN][1000 genomes]
rs179698	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179699	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179701	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179702	0.97[ASN][1000 genomes]
rs179704	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179705	0.96[ASN][1000 genomes]
rs179706	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179709	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179710	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs179711	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs179712	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs179714	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs179715	0.89[AMR][1000 genomes]
rs179717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs179718	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs179720	0.94[ASN][1000 genomes]
rs179721	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs179722	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs179723	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs179725	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs179726	0.92[ASN][1000 genomes]
rs179731	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs179733	0.92[ASN][1000 genomes]
rs179734	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs179736	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs179737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs179743	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs179744	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1884057	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024662	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2144040	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2179934	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2273171	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap]
rs2378813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28535014	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28648046	0.88[ASN][1000 genomes]
rs3784157	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3898581	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4340230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4981811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4981812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6571369	0.83[CHB][hapmap]
rs6571380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66463317	0.95[ASN][1000 genomes]
rs67209135	0.88[ASN][1000 genomes]
rs7140306	0.85[EUR][1000 genomes]
rs7140667	0.86[EUR][1000 genomes]
rs7143488	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7149411	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150581	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150642	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7153141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7154042	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7350754	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766146	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8018402	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322865	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes]
rs9322866	0.95[CHB][hapmap];0.91[CHD][hapmap]
rs9322869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1035937	chr14:31447842-31579660	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv542018	chr14:31447842-31579660	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1048736	chr14:31447842-31624912	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7155894	STRN3	cis	parietal	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31442400-31494400	Weak transcription	Gastric	stomach
2	chr14:31443400-31493800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:31444000-31472800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:31455200-31466400	Weak transcription	Primary T cells from cord blood	blood
5	chr14:31457200-31467600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:31457400-31467200	Weak transcription	Dnd41	blood
7	chr14:31457600-31467200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:31458600-31467200	Weak transcription	Lung	lung
9	chr14:31458600-31494000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:31460800-31467200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:31461000-31467600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:31461200-31466600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:31461200-31467400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:31461200-31492400	Weak transcription	Fetal Kidney	kidney
15	chr14:31461200-31494400	Weak transcription	Small Intestine	intestine
16	chr14:31461400-31467000	Weak transcription	Primary B cells from cord blood	blood
17	chr14:31461400-31467000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:31461400-31487400	Weak transcription	Right Ventricle	heart
19	chr14:31462000-31466600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:31462400-31467000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr14:31462400-31467200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:31463200-31465800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:31463200-31465800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr14:31463400-31465600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:31463400-31465800	Enhancers	Colon Smooth Muscle	Colon
26	chr14:31463400-31465800	Enhancers	HSMM	muscle
27	chr14:31463400-31466600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:31463600-31467200	Weak transcription	Fetal Intestine Small	intestine
29	chr14:31463800-31465400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:31463800-31465400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:31463800-31465400	Enhancers	A549	lung
32	chr14:31463800-31465400	Enhancers	Hela-S3	cervix
33	chr14:31463800-31465600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:31463800-31465600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr14:31463800-31465600	Enhancers	HUVEC	blood vessel
36	chr14:31463800-31465600	Enhancers	NHLF	lung
37	chr14:31463800-31465600	Enhancers	Osteobl	bone
38	chr14:31463800-31465800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:31463800-31465800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:31463800-31465800	Enhancers	Adipose Nuclei	Adipose
41	chr14:31463800-31465800	Enhancers	Brain Substantia Nigra	brain
42	chr14:31463800-31465800	Enhancers	HSMMtube	muscle
43	chr14:31463800-31466200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr14:31463800-31466400	Enhancers	NHDF-Ad	bronchial
45	chr14:31463800-31467800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr14:31464000-31465400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr14:31464000-31465600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr14:31464000-31465600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr14:31464000-31465600	Enhancers	Fetal Heart	heart
50	chr14:31464000-31465800	Enhancers	Liver	Liver

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