Variant report

Variant	rs1797041
Chromosome Location	chr20:23902595-23902596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1622461	0.81[AMR][1000 genomes]
rs1627002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741624	1.00[AMR][1000 genomes]
rs1741625	1.00[AMR][1000 genomes]
rs1741631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1741633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797033	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797034	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797039	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797040	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2208660	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2984253	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3004169	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23897400-23903000	Enhancers	Fetal Muscle Trunk	muscle
2	chr20:23897400-23903200	Enhancers	Fetal Muscle Leg	muscle
3	chr20:23898600-23903200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:23899000-23902600	Enhancers	Fetal Thymus	thymus
5	chr20:23899400-23903400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:23899600-23903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:23899800-23902800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:23900000-23902600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr20:23900000-23902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:23900000-23902800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr20:23901600-23902600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr20:23902000-23904400	Weak transcription	Pancreas	Pancrea
13	chr20:23902000-23907800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr20:23902000-23907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr20:23902200-23907200	Weak transcription	NHDF-Ad	bronchial
16	chr20:23902400-23902600	Bivalent Enhancer	Right Ventricle	heart
17	chr20:23902400-23909200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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