Variant report

Variant	rs1797611
Chromosome Location	chr3:112814101-112814102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:112814013-112814213	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:112814094-112814292	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000238593	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1620497	1.00[EUR][1000 genomes]
rs1795171	1.00[EUR][1000 genomes]
rs2613942	1.00[EUR][1000 genomes]
rs2613959	1.00[EUR][1000 genomes]
rs2633498	1.00[EUR][1000 genomes]
rs59096077	1.00[EUR][1000 genomes]
rs59899693	1.00[EUR][1000 genomes]
rs60040013	1.00[EUR][1000 genomes]
rs6795832	1.00[EUR][1000 genomes]
rs73853712	1.00[EUR][1000 genomes]
rs73853719	1.00[EUR][1000 genomes]
rs73857304	1.00[EUR][1000 genomes]
rs9784314	1.00[EUR][1000 genomes]
rs9784379	1.00[EUR][1000 genomes]
rs9784380	1.00[EUR][1000 genomes]
rs9784381	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112811800-112815000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:112812000-112816600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:112812200-112816200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:112812200-112816200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:112812800-112814200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:112812800-112815600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:112812800-112816600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:112813000-112814200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:112813000-112814200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:112813000-112815600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:112813000-112816200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:112813400-112815200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:112813600-112815000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:112813600-112816800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:112813800-112815000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:112813800-112815000	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:112813800-112815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:112813800-112816600	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links