Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112358731..112360862-chr3:112753827..112757709,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1620497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1795171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1797611	1.00[EUR][1000 genomes]
rs2613942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2613959	1.00[EUR][1000 genomes]
rs2633498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58310808	1.00[AMR][1000 genomes]
rs59096077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59899693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60040013	1.00[EUR][1000 genomes]
rs61438638	0.85[AMR][1000 genomes]
rs6795832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73853712	1.00[EUR][1000 genomes]
rs73853719	1.00[EUR][1000 genomes]
rs73854001	0.85[AMR][1000 genomes]
rs73857303	0.85[AMR][1000 genomes]
rs73857304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857305	0.85[AMR][1000 genomes]
rs73857307	0.85[AMR][1000 genomes]
rs9784314	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9784381	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112740800-112770200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112749800-112762800	Weak transcription	Primary B cells from cord blood	blood

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