Variant report

Variant	rs61438638
Chromosome Location	chr3:112697217-112697218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112696246..112698105-chr3:112700823..112702543,2	MCF-7	breast:
2	chr3:112357856..112364091-chr3:112692717..112699765,9	MCF-7	breast:
3	chr3:112364416..112367219-chr3:112696303..112699489,3	MCF-7	breast:
4	chr3:112690573..112692556-chr3:112697057..112699667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1620497	0.85[AMR][1000 genomes]
rs1795171	0.85[AMR][1000 genomes]
rs2613942	0.85[AMR][1000 genomes]
rs2633498	0.85[AMR][1000 genomes]
rs58310808	0.85[AMR][1000 genomes]
rs59096077	0.85[AMR][1000 genomes]
rs59899693	0.85[AMR][1000 genomes]
rs6795832	0.85[AMR][1000 genomes]
rs73854001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857303	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857304	0.85[AMR][1000 genomes]
rs73857305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857326	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7636067	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9784314	0.85[AMR][1000 genomes]
rs9784379	0.85[AMR][1000 genomes]
rs9784380	0.85[AMR][1000 genomes]
rs9784381	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112694200-112697600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:112694200-112698200	Enhancers	Primary B cells from cord blood	blood
3	chr3:112694400-112698400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:112694600-112698200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:112695000-112698600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:112695000-112702000	Weak transcription	Fetal Thymus	thymus
7	chr3:112695200-112697400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:112695200-112698200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:112695200-112701200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:112695400-112698200	Enhancers	Primary T cells from cord blood	blood
11	chr3:112695400-112698200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:112695400-112701600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:112695400-112701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:112695800-112697600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:112696000-112698000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:112696000-112701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:112696200-112698200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:112696200-112699000	Weak transcription	NHLF	lung
19	chr3:112696600-112697800	Weak transcription	GM12878-XiMat	blood
20	chr3:112696600-112701200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:112697000-112701800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr3:112697000-112702000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr3:112697000-112702000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:112697200-112697600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:112697200-112701800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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