Variant report

Variant	rs73857326
Chromosome Location	chr3:112740429-112740430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57916867	0.81[AMR][1000 genomes]
rs61438638	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72952172	0.81[AMR][1000 genomes]
rs73854001	0.93[EUR][1000 genomes]
rs73857303	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73857305	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73857307	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7636067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7644174	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112739000-112740800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112739000-112740800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:112739000-112742400	Weak transcription	Gastric	stomach
4	chr3:112739200-112741400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:112739200-112744000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:112739400-112741200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:112739600-112743000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:112739800-112743600	Weak transcription	Fetal Thymus	thymus
9	chr3:112740000-112740800	Enhancers	Primary T cells from cord blood	blood
10	chr3:112740000-112740800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:112740000-112740800	Enhancers	HMEC	breast
12	chr3:112740000-112742600	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:112740000-112743400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr3:112740000-112743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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