Variant report

Variant	rs73857307
Chromosome Location	chr3:112704446-112704447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112701295..112706602-chr3:112706876..112710741,6	MCF-7	breast:
2	chr3:112703995..112706074-chr3:112719277..112720786,2	K562	blood:

Variant related genes	Relation type
ENSG00000272844	Chromatin interaction
ENSG00000163607	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1620497	0.85[AMR][1000 genomes]
rs1795171	0.85[AMR][1000 genomes]
rs2613942	0.85[AMR][1000 genomes]
rs2633498	0.85[AMR][1000 genomes]
rs58310808	0.85[AMR][1000 genomes]
rs59096077	0.85[AMR][1000 genomes]
rs59899693	0.85[AMR][1000 genomes]
rs61438638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795832	0.85[AMR][1000 genomes]
rs73854001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857304	0.85[AMR][1000 genomes]
rs73857305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73857326	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7636067	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9784314	0.85[AMR][1000 genomes]
rs9784379	0.85[AMR][1000 genomes]
rs9784380	0.85[AMR][1000 genomes]
rs9784381	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112700800-112705000	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:112701000-112704600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:112701000-112707400	Enhancers	Primary T cells from cord blood	blood
4	chr3:112701200-112704600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:112701400-112705000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:112702200-112709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:112702400-112709000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:112702400-112709200	Weak transcription	GM12878-XiMat	blood
9	chr3:112702600-112704600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:112703200-112704600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:112703800-112709000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:112703800-112709000	Weak transcription	A549	lung
13	chr3:112703800-112709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:112703800-112709400	Weak transcription	Primary B cells from cord blood	blood
15	chr3:112703800-112709400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:112703800-112709400	Weak transcription	Gastric	stomach
17	chr3:112703800-112709400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:112704000-112706200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:112704000-112708800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:112704000-112709200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:112704000-112709200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:112704000-112709200	Weak transcription	Fetal Heart	heart
23	chr3:112704000-112709400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:112704000-112709400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:112704000-112709400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:112704000-112709400	Weak transcription	Placenta	Placenta
27	chr3:112704000-112709400	Weak transcription	Fetal Thymus	thymus
28	chr3:112704000-112709400	Weak transcription	Psoas Muscle	Psoas
29	chr3:112704000-112709400	Weak transcription	Thymus	Thymus
30	chr3:112704200-112709200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr3:112704400-112706000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:112704400-112706000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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