Variant report

Variant	rs1801733
Chromosome Location	chr19:39826131-39826132
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60059725	1.00[AMR][1000 genomes]
rs6508861	1.00[ASW][hapmap];0.83[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs8102889	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833830	chr19:39709538-39837846	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv911679	chr19:39735106-39924129	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
4	nsv1058514	chr19:39744112-39902580	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
5	nsv911680	chr19:39792460-39924129	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
6	nsv911681	chr19:39797716-39856246	Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv10629	chr19:39811570-39886212	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv870133	chr19:39822160-39938468	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39818600-39831600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr19:39818800-39826800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:39823800-39831200	Weak transcription	A549	lung
4	chr19:39824200-39826200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:39824800-39826200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
6	chr19:39825000-39826200	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr19:39825000-39826200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr19:39825000-39826200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr19:39825000-39827000	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr19:39825200-39826800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:39825200-39827000	Active TSS	Duodenum Mucosa	Duodenum
12	chr19:39825200-39827000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr19:39825400-39826600	Active TSS	Colonic Mucosa	Colon
14	chr19:39825400-39826800	Active TSS	GM12878-XiMat	blood
15	chr19:39825400-39827000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr19:39825400-39827000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr19:39825600-39826400	Active TSS	Colon Smooth Muscle	Colon
18	chr19:39825600-39826600	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr19:39825600-39826600	Active TSS	Esophagus	oesophagus
20	chr19:39825600-39826600	Active TSS	Rectal Smooth Muscle	rectum
21	chr19:39825600-39826800	Active TSS	Primary T cells from cord blood	blood
22	chr19:39825600-39826800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr19:39825600-39826800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr19:39825600-39826800	Active TSS	Brain Hippocampus Middle	brain
25	chr19:39825600-39826800	Active TSS	Fetal Thymus	thymus
26	chr19:39825600-39826800	Active TSS	Right Ventricle	heart
27	chr19:39825600-39826800	Active TSS	Thymus	Thymus
28	chr19:39825600-39827000	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr19:39825800-39826200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr19:39825800-39826400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
31	chr19:39825800-39826400	Active TSS	Brain Angular Gyrus	brain
32	chr19:39825800-39826400	Active TSS	Brain Anterior Caudate	brain
33	chr19:39825800-39826400	Active TSS	Brain Cingulate Gyrus	brain
34	chr19:39825800-39826400	Active TSS	Brain Substantia Nigra	brain
35	chr19:39825800-39826600	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr19:39825800-39826600	Active TSS	Liver	Liver
37	chr19:39825800-39826600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr19:39825800-39826600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr19:39825800-39826600	Active TSS	Fetal Muscle Trunk	muscle
40	chr19:39825800-39826600	Active TSS	Fetal Muscle Leg	muscle
41	chr19:39825800-39826600	Active TSS	Placenta	Placenta
42	chr19:39825800-39826600	Active TSS	Lung	lung
43	chr19:39825800-39826600	Active TSS	Pancreas	Pancrea
44	chr19:39825800-39826600	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr19:39825800-39826600	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr19:39825800-39826600	Active TSS	Small Intestine	intestine
47	chr19:39825800-39826600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
48	chr19:39825800-39826800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:39825800-39826800	Active TSS	Primary monocytes fromperipheralblood	blood
50	chr19:39825800-39826800	Active TSS	Primary neutrophils fromperipheralblood	blood

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