Variant report

Variant	esv10629
Chromosome Location	chr19:39811570-39886212
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3044)
CpG islands
(count:2138)
Chromatin interactive
region (count:148)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:3044 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:39881756-39882218	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:39818765-39818988	K562	blood:	n/a	n/a
3	ARID3A	chr19:39881612-39882076	K562	blood:	n/a	n/a
4	ARID3A	chr19:39868647-39869103	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:39872616-39872854	K562	blood:	n/a	n/a
6	ARID3A	chr19:39832530-39832934	K562	blood:	n/a	n/a
7	ARID3A	chr19:39818903-39818928	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:39838065-39838277	K562	blood:	n/a	n/a
9	ARID3A	chr19:39832469-39832737	HepG2	liver:	n/a	n/a
10	ATF1	chr19:39881203-39882238	K562	blood:	n/a	n/a
11	ATF1	chr19:39826618-39826849	K562	blood:	n/a	n/a
12	ATF1	chr19:39872524-39872888	K562	blood:	n/a	n/a
13	ATF1	chr19:39832207-39833079	K562	blood:	n/a	n/a
14	ATF2	chr19:39881150-39882201	H1-hESC	embryonic stem cell:	n/a	chr19:39881909-39881920
15	ATF2	chr19:39881092-39882364	GM12878	blood:	n/a	chr19:39881909-39881920
16	ATF2	chr19:39842027-39842566	GM12878	blood:	n/a	n/a
17	ATF2	chr19:39841981-39842635	GM12878	blood:	n/a	n/a
18	ATF2	chr19:39881066-39882255	H1-hESC	embryonic stem cell:	n/a	chr19:39881909-39881920
19	ATF2	chr19:39881128-39882263	GM12878	blood:	n/a	chr19:39881909-39881920
20	ATF2	chr19:39832278-39832788	GM12878	blood:	n/a	n/a
21	ATF3	chr19:39832054-39832919	A549	lung:	n/a	chr19:39832774-39832783 chr19:39832867-39832876 chr19:39832829-39832843 chr19:39832792-39832801
22	ATF3	chr19:39881201-39882403	A549	lung:	n/a	chr19:39881362-39881372 chr19:39881358-39881373 chr19:39881362-39881370 chr19:39881362-39881372 chr19:39881361-39881369 chr19:39881909-39881920 chr19:39881360-39881371 chr19:39881910-39881918 chr19:39881362-39881369 chr19:39881359-39881372 chr19:39881909-39881920 chr19:39881360-39881371 chr19:39881359-39881369 chr19:39881360-39881373 chr19:39881329-39881337
23	ATF3	chr19:39832167-39832932	A549	lung:	n/a	chr19:39832774-39832783 chr19:39832867-39832876 chr19:39832829-39832843 chr19:39832792-39832801
24	ATF3	chr19:39880832-39882417	A549	lung:	n/a	chr19:39881362-39881372 chr19:39881358-39881373 chr19:39881362-39881370 chr19:39881362-39881372 chr19:39881361-39881369 chr19:39881909-39881920 chr19:39881360-39881371 chr19:39881910-39881918 chr19:39881362-39881369 chr19:39881359-39881372 chr19:39881909-39881920 chr19:39881360-39881371 chr19:39881359-39881369 chr19:39881360-39881373 chr19:39881329-39881337
25	ATF3	chr19:39881662-39882121	K562	blood:	n/a	chr19:39881909-39881920 chr19:39881910-39881918 chr19:39881909-39881920
26	ATF3	chr19:39832913-39833143	K562	blood:	n/a	n/a
27	BACH1	chr19:39881406-39881585	K562	blood:	n/a	n/a
28	BACH1	chr19:39881314-39881726	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr19:39846773-39847257	K562	blood:	n/a	n/a
30	BACH1	chr19:39872629-39872838	K562	blood:	n/a	n/a
31	BACH1	chr19:39881841-39882195	K562	blood:	n/a	n/a
32	BACH1	chr19:39832369-39832765	H1-hESC	embryonic stem cell:	n/a	n/a
33	BATF	chr19:39842057-39842586	GM12878	blood:	n/a	n/a
34	BATF	chr19:39842145-39842560	GM12878	blood:	n/a	n/a
35	BCL11A	chr19:39826558-39826903	GM12878	blood:	n/a	n/a
36	BCL3	chr19:39881233-39881945	GM12878	blood:	n/a	n/a
37	BCL3	chr19:39819913-39820257	GM12878	blood:	n/a	n/a
38	BCL3	chr19:39818173-39819297	A549	lung:	n/a	n/a
39	BCL3	chr19:39819830-39820292	GM12878	blood:	n/a	n/a
40	BCL3	chr19:39879962-39882537	A549	lung:	n/a	n/a
41	BCL3	chr19:39880441-39882487	A549	lung:	n/a	n/a
42	BCL3	chr19:39878998-39880342	A549	lung:	n/a	chr19:39879688-39879701
43	BCL3	chr19:39877582-39878509	A549	lung:	n/a	n/a
44	BCL3	chr19:39832070-39832943	A549	lung:	n/a	chr19:39832792-39832805
45	BCL3	chr19:39878830-39879846	A549	lung:	n/a	chr19:39879688-39879701
46	BCL3	chr19:39831615-39832937	A549	lung:	n/a	chr19:39832792-39832805
47	BCLAF1	chr19:39832170-39832766	K562	blood:	n/a	n/a
48	BCLAF1	chr19:39826496-39826957	GM12878	blood:	n/a	n/a
49	BCLAF1	chr19:39832079-39832910	GM12878	blood:	n/a	chr19:39832792-39832805
50	BCLAF1	chr19:39881186-39882306	GM12878	blood:	n/a	n/a

(count:2138 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:39881847-39881897	BE2_C	brain:	n/a
2	chr19:39827269-39827319	HAEpiC	amniotic membrane:	n/a
3	chr19:39875047-39875097	SKMC	muscle:	n/a
4	chr19:39881847-39881897	BE2_C	brain:	n/a
5	chr19:39827269-39827319	HAEpiC	amniotic membrane:	n/a
6	chr19:39875047-39875097	SKMC	muscle:	n/a
7	chr19:39884218-39884268	HCT-116	colon:	n/a
8	chr19:39826821-39826871	MCF10A-Er-Src	breast:	n/a
9	chr19:39826693-39826743	AG10803	skin:	n/a
10	chr19:39826677-39826727	BJ	skin:	n/a
11	chr19:39875047-39875097	T-47D	breast:	n/a
12	chr19:39882091-39882141	HEEpiC	esophagus:	n/a
13	chr19:39881530-39881580	AoSMC	blood vessel:	n/a
14	chr19:39833510-39833560	HUVEC	blood vessel:	n/a
15	chr19:39833601-39833651	PANC-1	pancreas:	n/a
16	chr19:39827384-39827434	Jurkat	blood:	n/a
17	chr19:39834947-39834997	GM06990	blood:	n/a
18	chr19:39819001-39819051	HRPEpiC	eye:	n/a
19	chr19:39884218-39884268	U87	brain:	n/a
20	chr19:39832795-39832845	LNCaP	prostate:	n/a
21	chr19:39881965-39882015	IMR90	lung:	fetal
22	chr19:39826927-39826977	ECC-1	luminal epithelium:	n/a
23	chr19:39833510-39833560	PFSK-1	brain:	n/a
24	chr19:39881719-39881769	AG04449	skin:	fetal
25	chr19:39877679-39877729	AG04449	skin:	fetal
26	chr19:39827269-39827319	HNPCEpiC	eye:	n/a
27	chr19:39813728-39813778	GM06990	blood:	n/a
28	chr19:39881847-39881897	K562	blood:	n/a
29	chr19:39834947-39834997	HCPEpiC	choroid plexus:	n/a
30	chr19:39836003-39836053	AG09319	gingival:	n/a
31	chr19:39813728-39813778	HCT-116	colon:	n/a
32	chr19:39881208-39881258	NB4	blood:	n/a
33	chr19:39881530-39881580	PANC-1	pancreas:	n/a
34	chr19:39833510-39833560	GM19239	blood:	n/a
35	chr19:39882091-39882141	H1-hESC	embryonic stem cell:	embryo
36	chr19:39831825-39831875	HPAEpiC	pulmonary alveolar:	n/a
37	chr19:39882127-39882177	SK-N-MC	brain:	n/a
38	chr19:39831825-39831875	HRCEpiC	kidney:	n/a
39	chr19:39881393-39881443	GM12892	blood:	n/a
40	chr19:39830054-39830104	GM19239	blood:	n/a
41	chr19:39876337-39876387	AG09309	skin:	n/a
42	chr19:39826923-39826973	HEK293	kidney:	embryo
43	chr19:39881847-39881897	Hela-S3	cervix:	n/a
44	chr19:39833609-39833659	K562	blood:	n/a
45	chr19:39862918-39862968	HCF	heart:	n/a
46	chr19:39877679-39877729	MCF-7	breast:	n/a
47	chr19:39875047-39875097	GM06990	blood:	n/a
48	chr19:39813728-39813778	SKMC	muscle:	n/a
49	chr19:39826668-39826718	SAEC	small airway:	n/a
50	chr19:39826927-39826977	HCF	heart:	n/a

(count:148 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr19:39837697..39838486-chr3:122102704..122103488,2	Hela-S3	cervix:
2	chr19:39855111..39857327-chr19:39867163..39868939,2	MCF-7	breast:
3	chr19:39848239..39850464-chr19:39853560..39855951,2	MCF-7	breast:
4	chr19:39794106..39797864-chr19:39814287..39817446,3	K562	blood:
5	chr12:67662519..67663127-chr19:39881643..39882266,2	HCT-116	colon:
6	chr19:39835239..39836908-chr19:39924259..39926190,2	MCF-7	breast:
7	chr19:39831462..39833819-chr19:39895852..39900331,6	MCF-7	breast:
8	chr19:39872596..39873101-chr19:39881272..39881848,2	K562	blood:
9	chr19:39826340..39829691-chr19:39831267..39834495,5	K562	blood:
10	chr19:39840535..39845164-chr19:39896257..39899085,6	K562	blood:
11	chr19:39880299..39881893-chr19:40023517..40025617,2	K562	blood:
12	chr19:39815619..39817650-chr19:39832398..39834004,2	K562	blood:
13	chr19:39859941..39863633-chr19:39878903..39882994,5	MCF-7	breast:
14	chr19:39615312..39617017-chr19:39817351..39819854,2	MCF-7	breast:
15	chr19:39826587..39828135-chr19:39829547..39831242,2	K562	blood:
16	chr19:39846643..39848442-chr19:39897327..39899339,2	MCF-7	breast:
17	chr19:39850438..39852750-chr19:39855800..39859218,3	MCF-7	breast:
18	chr19:39851453..39853087-chr19:39880088..39881805,2	MCF-7	breast:
19	chr19:39881392..39883533-chr19:39972449..39976025,3	K562	blood:
20	chr19:39847929..39849448-chr19:39964068..39965681,2	K562	blood:
21	chr19:39600885..39601696-chr19:39818483..39819058,3	MCF-7	breast:
22	chr19:39818815..39820498-chr19:39824336..39826282,2	K562	blood:
23	chr19:39881608..39883265-chr19:39883392..39885863,2	MCF-7	breast:
24	chr19:39811133..39814122-chr19:39815915..39818561,2	K562	blood:
25	chr19:39841107..39843356-chr19:39881795..39884514,2	MCF-7	breast:
26	chr19:39832142..39833135-chr2:131850385..131851088,2	HCT-116	colon:
27	chr19:39835229..39838232-chr19:39847109..39849134,3	MCF-7	breast:
28	chr19:39797498..39799055-chr19:39814063..39816846,2	MCF-7	breast:
29	chr19:39689429..39690305-chr19:39818744..39819440,2	MCF-7	breast:
30	chr19:39703124..39706234-chr19:39814866..39817784,3	K562	blood:
31	chr19:39832183..39834517-chr19:39925160..39926923,2	MCF-7	breast:
32	chr19:39838097..39840751-chr19:39908169..39910742,2	K562	blood:
33	chr19:39831059..39833135-chr19:39987962..39989581,2	MCF-7	breast:
34	chr19:39753838..39756399-chr19:39831359..39832891,2	K562	blood:
35	chr19:39614928..39617634-chr19:39831535..39834253,2	K562	blood:
36	chr19:39849513..39851836-chr19:39891478..39893245,2	K562	blood:
37	chr19:39829936..39834375-chr19:39901478..39904741,5	MCF-7	breast:
38	chr19:39826203..39828584-chr19:39871220..39872824,2	K562	blood:
39	chr19:39832709..39837239-chr19:39925090..39928725,4	K562	blood:
40	chr19:39833435..39835021-chr19:39840872..39844768,3	MCF-7	breast:
41	chr19:39831356..39834540-chr19:39880141..39881911,4	MCF-7	breast:
42	chr19:39830669..39836861-chr19:39895802..39900887,6	MCF-7	breast:
43	chr19:39845858..39848835-chr19:39849881..39851532,2	K562	blood:
44	chr19:39879787..39883867-chr19:39884525..39889123,13	K562	blood:
45	chr19:39818884..39821188-chr19:39900599..39903098,4	K562	blood:
46	chr19:39834302..39836305-chr19:39857341..39859446,2	K562	blood:
47	chr19:39690001..39692280-chr19:39837485..39839141,2	K562	blood:
48	chr19:39822373..39824358-chr19:39828655..39830757,2	MCF-7	breast:
49	chr19:39702433..39703702-chr19:39818478..39819662,6	MCF-7	breast:
50	chr19:39834979..39837753-chr19:39902595..39905469,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SAMD4B-1	chr19:39875761-39876338	NONHSAT066285
2	lnc-MED29-3	chr19:39840440-39843129	NONHSAT066282
3	lnc-MED29-1	chr19:39859793-39860086	NONHSAT066284
4	lnc-LRFN1-2	chr19:39858375-39858444	ucscGeneNc_uc002nvo_1

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SAMD4B	hsa-let-7a-5p	chr19:39874276-39874297

Variant related genes	Relation type
ENSG00000268262	TF binding region
ENSG00000269246	TF binding region
PAF1	TF binding region
RN7SL566P	TF binding region
MED29	TF binding region
GMFG	TF binding region
SAMD4B	TF binding region
ENSG00000268262	CpG island
ENSG00000269246	CpG island
PAF1	CpG island
RN7SL566P	CpG island
MED29	CpG island
GMFG	CpG island
SAMD4B	CpG island
ENSG00000143878	chromatin interactions
ENSG00000128626	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000272311	chromatin interactions
ENSG00000176396	chromatin interactions
ENSG00000176401	chromatin interactions
ENSG00000268510	chromatin interactions
ENSG00000090932	chromatin interactions
ENSG00000269246	chromatin interactions
ENSG00000063322	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000179134	chromatin interactions
ENSG00000111530	chromatin interactions
ENSG00000104824	chromatin interactions
ENSG00000261423	chromatin interactions
ENSG00000090924	chromatin interactions
ENSG00000152102	chromatin interactions
ENSG00000114023	chromatin interactions
ENSG00000104835	chromatin interactions
ENSG00000105193	chromatin interactions
ENSG00000268262	chromatin interactions
ENSG00000006712	chromatin interactions
ENSG00000199377	chromatin interactions
ENSG00000269584	chromatin interactions
ENSG00000269792	chromatin interactions
ENSG00000105197	chromatin interactions
ENSG00000130755	chromatin interactions
ENSG00000166233	chromatin interactions
ENSG00000196235	chromatin interactions
ENSG00000213926	chromatin interactions
ENSG00000128016	chromatin interactions
ENSG00000241983	chromatin interactions
ENSG00000130669	chromatin interactions

Extended variants
information (count: 2839 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:2839 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558741431	chr19:39811640-39811641	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs251911	chr19:39811724-39811725	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs577268548	chr19:39811825-39811826	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs62122891	chr19:39811827-39811828	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs560001631	chr19:39811848-39811849	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs573444394	chr19:39811859-39811860	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs542540356	chr19:39811932-39811933	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs564053172	chr19:39811967-39811968	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs142282004	chr19:39812010-39812011	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs552155889	chr19:39812228-39812229	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs563999206	chr19:39812310-39812311	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs79790590	chr19:39812315-39812316	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs534406055	chr19:39812344-39812345	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs567892703	chr19:39812348-39812349	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs559137049	chr19:39812381-39812382	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs146357888	chr19:39812408-39812409	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs550590435	chr19:39812490-39812491	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs207477207	chr19:39812545-39812546	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs569140228	chr19:39812651-39812652	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs577749709	chr19:39812687-39812688	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs190341016	chr19:39812712-39812713	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs201150538	chr19:39812888-39812889	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs558930489	chr19:39812892-39812893	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs148145696	chr19:39812938-39812939	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs141873372	chr19:39812946-39812947	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs577467088	chr19:39812952-39812953	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs12978870	chr19:39813032-39813033	Weak transcription	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs542454572	chr19:39813083-39813084	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs181799187	chr19:39813084-39813085	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs575916529	chr19:39813086-39813087	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs545449394	chr19:39813198-39813199	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs13343914	chr19:39813239-39813240	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs564093474	chr19:39813253-39813254	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs139666299	chr19:39813275-39813276	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs9967606	chr19:39813326-39813327	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs574495026	chr19:39813332-39813333	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs561486389	chr19:39813344-39813345	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs529012715	chr19:39813349-39813350	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs144613474	chr19:39813369-39813370	Weak transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs569026275	chr19:39813396-39813397	Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs539734793	chr19:39813423-39813424	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs551417204	chr19:39813455-39813456	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs79959719	chr19:39813616-39813617	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs535061898	chr19:39813628-39813629	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs147467057	chr19:39813671-39813672	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs188581788	chr19:39813683-39813684	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs568590556	chr19:39813700-39813701	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs537101103	chr19:39813728-39813729	Strong transcription Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs557546936	chr19:39813745-39813746	Strong transcription Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs2883106	chr19:39813758-39813759	Strong transcription Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21509527	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:3918 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39809800-39812000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr19:39809800-39812200	Active TSS	Brain Cingulate Gyrus	brain
3	chr19:39810000-39812000	Active TSS	Brain Anterior Caudate	brain
4	chr19:39810200-39812200	Active TSS	Fetal Kidney	kidney
5	chr19:39810400-39811800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr19:39810400-39812000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:39810400-39812000	Active TSS	Brain Angular Gyrus	brain
8	chr19:39810400-39812000	Enhancers	Placenta	Placenta
9	chr19:39810400-39812200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr19:39810400-39812200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr19:39810400-39812200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:39810600-39811800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:39810600-39811800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:39810600-39811800	Active TSS	K562	blood
15	chr19:39810600-39812000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
16	chr19:39810600-39812000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr19:39810600-39812000	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr19:39810600-39812000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr19:39810600-39812000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr19:39810600-39812200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr19:39810600-39812200	Active TSS	Fetal Brain Female	brain
22	chr19:39810800-39811600	Bivalent/Poised TSS	HSMM	muscle
23	chr19:39810800-39812000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr19:39811000-39811600	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr19:39811000-39811800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:39811000-39811800	Active TSS	Small Intestine	intestine
27	chr19:39811000-39812000	Active TSS	Rectal Smooth Muscle	rectum
28	chr19:39811000-39812000	Active TSS	A549	lung
29	chr19:39811000-39812200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr19:39811200-39811600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr19:39811200-39811600	Active TSS	Lung	lung
32	chr19:39811200-39811800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr19:39811200-39811800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr19:39811200-39811800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr19:39811200-39811800	Active TSS	Aorta	Aorta
36	chr19:39811200-39811800	Weak transcription	Fetal Lung	lung
37	chr19:39811200-39811800	Active TSS	Ovary	ovary
38	chr19:39811200-39811800	Active TSS	Pancreas	Pancrea
39	chr19:39811200-39811800	Active TSS	Thymus	Thymus
40	chr19:39811200-39811800	Active TSS	Dnd41	blood
41	chr19:39811200-39812000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:39811200-39812000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr19:39811200-39812000	Enhancers	Primary B cells from cord blood	blood
44	chr19:39811200-39812000	Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr19:39811200-39812000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr19:39811200-39812000	Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr19:39811200-39812000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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