Variant report

Variant	rs560001631
Chromosome Location	chr19:39811848-39811849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr19:39811727-39812359	K562	blood:	n/a	chr19:39812350-39812358
2	ZBTB7A	chr19:39810552-39812252	ECC-1	luminal epithelium:	n/a	n/a
3	MAZ	chr19:39810645-39812178	IMR90	lung:	n/a	chr19:39810741-39810751 chr19:39810809-39810818
4	ZBTB7A	chr19:39811839-39812323	K562	blood:	n/a	n/a
5	ZBTB7A	chr19:39811323-39812722	ECC-1	luminal epithelium:	n/a	chr19:39812350-39812358
6	MAZ	chr19:39810836-39811992	K562	blood:	n/a	n/a
7	SIN3AK20	chr19:39811847-39812182	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:39811404..39814084-chr19:39901271..39903376,2	MCF-7	breast:
2	chr19:39341602..39344396-chr19:39810637..39813386,2	K562	blood:
3	chr19:39809900..39813494-chr19:39831059..39834441,3	MCF-7	breast:
4	chr19:39811372..39812878-chr19:39831167..39833886,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268262	TF binding region
ENSG00000179134	Chromatin interaction
ENSG00000104824	Chromatin interaction
ENSG00000130755	Chromatin interaction
ENSG00000269246	Chromatin interaction
ENSG00000090924	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833830	chr19:39709538-39837846	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv911679	chr19:39735106-39924129	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
4	nsv1058514	chr19:39744112-39902580	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
5	nsv911680	chr19:39792460-39924129	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
6	nsv911681	chr19:39797716-39856246	Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv3373441	chr19:39810537-39813085	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3429395	chr19:39810562-39812810	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv3354847	chr19:39810812-39812410	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv10629	chr19:39811570-39886212	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39809800-39812000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr19:39809800-39812200	Active TSS	Brain Cingulate Gyrus	brain
3	chr19:39810000-39812000	Active TSS	Brain Anterior Caudate	brain
4	chr19:39810200-39812200	Active TSS	Fetal Kidney	kidney
5	chr19:39810400-39812000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:39810400-39812000	Active TSS	Brain Angular Gyrus	brain
7	chr19:39810400-39812000	Enhancers	Placenta	Placenta
8	chr19:39810400-39812200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr19:39810400-39812200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr19:39810400-39812200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:39810600-39812000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr19:39810600-39812000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr19:39810600-39812000	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr19:39810600-39812000	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr19:39810600-39812000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr19:39810600-39812200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr19:39810600-39812200	Active TSS	Fetal Brain Female	brain
18	chr19:39810800-39812000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr19:39811000-39812000	Active TSS	Rectal Smooth Muscle	rectum
20	chr19:39811000-39812000	Active TSS	A549	lung
21	chr19:39811000-39812200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr19:39811200-39812000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr19:39811200-39812000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr19:39811200-39812000	Enhancers	Primary B cells from cord blood	blood
25	chr19:39811200-39812000	Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr19:39811200-39812000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr19:39811200-39812000	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr19:39811200-39812000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:39811200-39812000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr19:39811200-39812000	Active TSS	Adipose Nuclei	Adipose
33	chr19:39811200-39812000	Active TSS	Brain Substantia Nigra	brain
34	chr19:39811200-39812000	Active TSS	Fetal Stomach	stomach
35	chr19:39811200-39812000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
36	chr19:39811200-39812200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr19:39811200-39812200	Active TSS	Brain Germinal Matrix	brain
38	chr19:39811200-39812200	Active TSS	Brain Hippocampus Middle	brain
39	chr19:39811200-39812200	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr19:39811200-39812200	Enhancers	Fetal Thymus	thymus
41	chr19:39811200-39812200	Active TSS	Stomach Smooth Muscle	stomach
42	chr19:39811200-39812400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr19:39811200-39812400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:39811200-39817600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr19:39811200-39817800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr19:39811200-39819600	Weak transcription	GM12878-XiMat	blood
47	chr19:39811400-39812000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr19:39811400-39812000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr19:39811400-39812000	Enhancers	Liver	Liver
50	chr19:39811400-39812000	Active TSS	Psoas Muscle	Psoas

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